Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_F16
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 71 7e-13
11_06_0034 - 19448316-19449767 33 0.30
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619... 29 2.8
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 29 2.8
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 29 3.7
03_05_0666 + 26561185-26561285,26561391-26561743,26562360-265623... 29 4.9
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 6.5
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 28 6.5
02_04_0142 + 20167876-20169108 28 6.5
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 28 8.6
11_05_0019 + 18426960-18427292,18428039-18428163,18428722-184288... 28 8.6
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 28 8.6
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 8.6
>04_04_0792 - 28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 71.3 bits (167), Expect = 7e-13
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 2/197 (1%)
Frame = -3
Query: 611 NVRCXGDGRPFAIEITDPRRDLTGDELKRVCEEI--SKGGQVIVQKLMHVSRNELSELKK 438
+VR G GRPF +E+ + R + E++++ ++I S+ V V+ L V + +++
Sbjct: 799 DVRMLGSGRPFLVEVLNVRSIPSATEVQQIADKINDSEKKHVRVRNLKLVGSEIWTMMRE 858
Query: 437 GEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINEYRNTEAGDEARIVVKQ 258
GE K K Y AL T +T++D+ I+ ++ E + Q
Sbjct: 859 GEAEKQKQYAALIW---------------TSRPLTDDDLHNISLIKDME--------IVQ 895
Query: 257 RTPIXXXXXXXXXXXXXRIYDVVARRVPDYPQLFTLTIRTEAGTYVKEWCHGEFGRTTPS 78
+TPI I+ + ++ + L + T+AGTY+KE+ HG+ GRT PS
Sbjct: 896 KTPIRVLHRRSPLERKRIIHWMEIAKISGGSNYYLLHLCTQAGTYIKEFVHGDLGRTHPS 955
Query: 77 LRDAAGFRADILALDVT 27
+ RA+IL LDVT
Sbjct: 956 VGVMLSCRAEILQLDVT 972
>11_06_0034 - 19448316-19449767
Length = 483
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = +3
Query: 102 PVAPLLHVRARFRADREGEQLRVVRHPPGHYVIYPPGSGEQRAPVQHADRRPLLHHDPGL 281
P A H+R R A+RE E+ R+ + P G Q RRP + H G
Sbjct: 372 PSAAAAHLRRR-HAEREHERYAAARNAAVRGAVPGPAGGGQSGW-----RRPFVTHFTGC 425
Query: 282 VPCLGVPVLIY 314
PC G P IY
Sbjct: 426 QPCGGEPNKIY 436
>08_02_0199 -
14160881-14161054,14161151-14161306,14161802-14161921,
14162046-14162143,14162969-14163041,14164472-14164619,
14165108-14165232,14165611-14165652,14165757-14166074,
14166633-14167559,14167584-14167852,14167946-14168255,
14169281-14169465,14170795-14170901,14171320-14171486
Length = 1072
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 443 KKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEED 324
++G T C ++ GN EPNIL+ P+ T D
Sbjct: 53 RRGRHTLCSVQLMDALRGGNLQVEPNILHSPKPLMSTRRD 92
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Frame = -3
Query: 584 PFAIEITDPRRDLTGDELKRVCEEISKGGQVIVQKL-------MHVSRNELSELKKGEET 426
P + E D R+ L K + + K + +VQ L +H E++ + +ET
Sbjct: 240 PMSKESKDARKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQET 299
Query: 425 KCKTYEALCIKL--GNENAEPNILNGKTPVAV 336
E +C + GN +AE + NGKT + V
Sbjct: 300 PVSHGEVICFSIYSGNSDAEADFGNGKTCIWV 331
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = -3
Query: 572 EITDPRRDLTGDELKRVCEEISKGGQVIVQKLMHVSRNELSELKKGEETKCKTYEALCIK 393
E + R ++ ++ + + +GGQV + + +RN + L K E KCK+ + + +
Sbjct: 385 EGVEARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGKCKSPKLIIVP 444
Query: 392 LGNEN 378
+ N N
Sbjct: 445 IMNIN 449
>03_05_0666 +
26561185-26561285,26561391-26561743,26562360-26562361,
26562687-26563146,26572609-26572973
Length = 426
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 481 F*TITWPPFEISSQTLFSS---SPVRSLLGSVISIAKGL 588
F +I WPPFEI F S +++LL S I + GL
Sbjct: 32 FQSIWWPPFEILQHDFFRGSYCSILQTLLASTIRTSSGL 70
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 487 TITWPPFEISSQTLFSSSPV-RSLLGSVISIAKGLPSPXHLTFHVFASS 630
T++ P EI + S+ + +S + SIA G P P HLT H +A +
Sbjct: 604 TVSTQPQEIVNPGASSNPQLNQSQPSTSTSIASGPPLPQHLTLHPYAQA 652
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 487 TITWPPFEISSQTLFSSSPVRSLLGSVISIAKGLPSPXHLTFHVFASSRH 636
T+ PP ++ + +S VR LL S+ LPSP L +SSRH
Sbjct: 28 TMVMPPLLAAAAAMAASGQVRRLL----SLRAALPSPWPLATMAPSSSRH 73
>02_04_0142 + 20167876-20169108
Length = 410
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 222 QRAPVQHADRRPLLHHDPGLVPCLGVPVL 308
Q P H + P LHH G+VP G P+L
Sbjct: 29 QPPPPFHFAQDPHLHHHQGMVPVRGNPML 57
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 186 GHYVIYPPGSGEQRAPVQHADRRPLLHHDPGLVP 287
G+ ++PPG+G VQH+D RP P +P
Sbjct: 65 GNGSLHPPGNGR----VQHSDHRPAARGSPRSLP 94
>11_05_0019 +
18426960-18427292,18428039-18428163,18428722-18428874,
18428959-18429145
Length = 265
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -2
Query: 138 GSGHVREGVVPRGVRSHHAEPPRRRGLPGRHTGARRHRVLLD 13
G G G VPR R+ A P R L GA VLLD
Sbjct: 31 GGGGRWRGAVPRRARARRAVVPPRASLVDSSGGAAAAAVLLD 72
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +3
Query: 357 IQNIRFSVLITELYAQSFVSLAFRLFPLFKFRQLVPGDMH*FLNDHLATFRNLLADPLQL 536
++NIR + +A LAF+L ++ FRQ L + + +
Sbjct: 632 VENIRIVLTDGASHAVDSSELAFKLASIYAFRQCYAAARPVILEPVMKVELKVPTEFQGT 691
Query: 537 VTGEVSSR---VCDFDSEGSTITXTPHVP 614
VTG+++ R + D EG HVP
Sbjct: 692 VTGDMNKRKGIIVGNDQEGDDTVVVCHVP 720
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -3
Query: 467 SRNELSE--LKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEE 327
S +LSE LK+ E+ KT E L + N +PN ++GK V E+
Sbjct: 252 STPKLSEVVLKRNEDENGKTEETLVAEQCNLTKDPNPMSGKERDQVAEQ 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,755,553
Number of Sequences: 37544
Number of extensions: 476454
Number of successful extensions: 1596
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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