Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_F16
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117203-12|CAB60423.1| 487|Caenorhabditis elegans Hypothetical... 69 3e-12
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 30 1.9
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 30 1.9
U14521-1|AAA64269.1| 360|Caenorhabditis elegans ppp-1 protein. 29 2.5
AC006608-3|AAF39757.1| 404|Caenorhabditis elegans Pyrophosphory... 29 2.5
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 4.4
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 4.4
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical pr... 28 5.8
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 28 5.8
U40160-1|AAA81155.3| 531|Caenorhabditis elegans Hypothetical pr... 28 5.8
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 5.8
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 5.8
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ... 28 7.7
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut... 28 7.7
>AL117203-12|CAB60423.1| 487|Caenorhabditis elegans Hypothetical
protein Y48C3A.20 protein.
Length = 487
Score = 69.3 bits (162), Expect = 3e-12
Identities = 67/212 (31%), Positives = 92/212 (43%), Gaps = 9/212 (4%)
Frame = -3
Query: 611 NVRCXGDGRPFAIEI-----TDPRRDLTGDE-LKRVCEEISKGGQVIVQKLMHVSRNELS 450
+VR G GRPF +E+ T P R + E LK V E I+ V V L V R+
Sbjct: 271 DVRMLGTGRPFVVELRNCRTTAPVRGIKYLETLKTVQEAINVQKDVKVVSLTRVPRDVSE 330
Query: 449 ELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINEYRNTEAGDEARI 270
+L GEE K K Y A C I I++ + T A + +
Sbjct: 331 KLCVGEEDKRKQYCAYCYS-----------------------ILPISDSQFTAAQSKIPL 367
Query: 269 VVKQRTPIXXXXXXXXXXXXXRIYDVVARRVPDYPQLFTLTIRTEAGTYVKEWCHGEFGR 90
+ Q+TP+ IY + ++ D+ F + + T+AGTY+KE+ HG+FGR
Sbjct: 368 KIVQKTPVRVMKRRALLDRERWIYSMNFLKLDDHH--FEVRLETQAGTYIKEFVHGDFGR 425
Query: 89 TTPSLR---DAAGFRADILALDVTACCSTXPP 3
T PSL D DIL LDV PP
Sbjct: 426 TRPSLAELLDVEHGEVDILELDVEKVDLEWPP 457
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 464 RNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINE--YRNTE 291
R + E +KG + L + L N AE N+L K +A+ EE++ R+ + +R T
Sbjct: 157 RKKFEEAQKGRAEDRLKIDELLVTLSNLEAEINLL--KRRIALLEEEVARLKKENFRLTS 214
Query: 290 AGDEARIVVKQRT 252
R + Q T
Sbjct: 215 ELQRVRSELDQET 227
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 464 RNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINE--YRNTE 291
R + E +KG + L + L N AE N+L K +A+ EE++ R+ + +R T
Sbjct: 157 RKKFEEAQKGRAEDRLKIDELLVTLSNLEAEINLL--KRRIALLEEEVARLKKENFRLTS 214
Query: 290 AGDEARIVVKQRT 252
R + Q T
Sbjct: 215 ELQRVRSELDQET 227
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 464 RNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINE--YRNTE 291
R + E +KG + L + L N AE N+L K +A+ EE++ R+ + +R T
Sbjct: 157 RKKFEEAQKGRAEDRLKIDELLVTLSNLEAEINLL--KRRIALLEEEVARLKKENFRLTS 214
Query: 290 AGDEARIVVKQRT 252
R + Q T
Sbjct: 215 ELQRVRSELDQET 227
>U14521-1|AAA64269.1| 360|Caenorhabditis elegans ppp-1 protein.
Length = 360
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 249 RRPLL--HHDPGLVPCLGVPVLIYPLDVLLGDG 341
R P+L H L+P +GVP+ +YPL LL G
Sbjct: 16 RMPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTG 48
>AC006608-3|AAF39757.1| 404|Caenorhabditis elegans
Pyrophosphorylase family protein 1 protein.
Length = 404
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 249 RRPLL--HHDPGLVPCLGVPVLIYPLDVLLGDG 341
R P+L H L+P +GVP+ +YPL LL G
Sbjct: 16 RMPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTG 48
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 476 MHVSRNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINEYRN 297
++ E + KK E K T E +NAE N + +A+T+E I + +YRN
Sbjct: 1062 IYTQMQEYEKQKKIAEAKLSTKEC-------QNAESNYRDAIIELAITKESISDLTKYRN 1114
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 476 MHVSRNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINEYRN 297
++ E + KK E K T E +NAE N + +A+T+E I + +YRN
Sbjct: 1048 IYTQMQEYEKQKKIAEAKLSTKEC-------QNAESNYRDAIIELAITKESISDLTKYRN 1100
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 476 MHVSRNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRINEYRN 297
++ E + KK E K T E +NAE N + +A+T+E I + +YRN
Sbjct: 1048 IYTQMQEYEKQKKIAEAKLSTKEC-------QNAESNYRDAIIELAITKESISDLTKYRN 1100
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 565 VISIAKGLPSPXHLTFHVFASSRHELQS 648
++SI + P H+TFH F H+ QS
Sbjct: 741 IMSIGFSVDFPAHITFHYFREGLHDPQS 768
>Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical
protein T28F4.3 protein.
Length = 490
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -3
Query: 386 NENAEPNILNGKTPVAVTEEDIQRINEYRNTEAGDEARIVVKQRTP 249
N+ +PN+ +++E+ + + N YR+ GD+ R+V+K+R P
Sbjct: 69 NKEYKPNVTT-----SISEKMMDK-NRYRHIFCGDDNRVVLKERDP 108
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = -3
Query: 464 RNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRI--NEYRNTE 291
RN+L E ++G + K + + +LG AE +L K +++ EE I + +R +
Sbjct: 156 RNKLHEAERGADVTRKELDNVLGRLGALEAEIELL--KRRISLMEESIGHLKRENHRMID 213
Query: 290 AGDEARIVVKQRT 252
+ AR V+Q T
Sbjct: 214 SLHHARNAVEQET 226
>U40160-1|AAA81155.3| 531|Caenorhabditis elegans Hypothetical
protein C56E10.3 protein.
Length = 531
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = -3
Query: 491 IVQKLMHVSRNELSELKKGEETKCKTYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRI 312
I Q+L+ + + +L K KC YE LC K AE + L+ ++ + D +
Sbjct: 30 ITQQLLEQTEGKRKQLDK----KCGEYEQLCKKTAKLKAEKSRLDVESTQLTAQSD-EID 84
Query: 311 NEYRNTEAGDEARIVVKQR 255
+ E EA +++Q+
Sbjct: 85 QSFTKVEQNAEASFLLQQQ 103
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 28 VTSSASMSARKPAASRRLGVVRPNSPWHHSF 120
VT SAS + P S R+GV P HH F
Sbjct: 683 VTGSASSRSGAPQGSVRIGVAGHKLPTHHIF 713
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 28 VTSSASMSARKPAASRRLGVVRPNSPWHHSF 120
VT SAS + P S R+GV P HH F
Sbjct: 683 VTGSASSRSGAPQGSVRIGVAGHKLPTHHIF 713
>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
protein.
Length = 1497
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +1
Query: 454 NSFLETCISF*TITWPPFEISSQTLFSSSPVRSLLGSVISIAKGLPSPXHL------TFH 615
+ LET I F T T+ F++ + L+ S IS+ GL + H F
Sbjct: 1389 SGILETHI-FVTQTFHKFDLRTTMLYICEKHFRATNSGISMFTGLHAKNHFGRPNFKAFF 1447
Query: 616 VFASSRHELQSVVHVFRC 669
F S H+ QS + VF C
Sbjct: 1448 QFIQSEHKEQSKIGVFSC 1465
>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cuticle
protein 3 protein.
Length = 1497
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +1
Query: 454 NSFLETCISF*TITWPPFEISSQTLFSSSPVRSLLGSVISIAKGLPSPXHL------TFH 615
+ LET I F T T+ F++ + L+ S IS+ GL + H F
Sbjct: 1389 SGILETHI-FVTQTFHKFDLRTTMLYICEKHFRATNSGISMFTGLHAKNHFGRPNFKAFF 1447
Query: 616 VFASSRHELQSVVHVFRC 669
F S H+ QS + VF C
Sbjct: 1448 QFIQSEHKEQSKIGVFSC 1465
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,552,737
Number of Sequences: 27780
Number of extensions: 363059
Number of successful extensions: 1174
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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