Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F16
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 126  VREGVVPRGVRSHHAEPPRR 67
            ++ G V R +RSH    PRR
Sbjct: 1667 IKRGTVIRSIRSHSTWDPRR 1686


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = -2

Query: 150 HDPHGSGHVREGVVPRGVRSHHAEPPRRRGLPGRHT 43
           H   G GH      P    SH A P  +   P  H+
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHS 451


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 97  NSPWHHSFTYVPASVRIVRVNNCG*SGTLL 186
           N+PW +        V  + V++CG + T+L
Sbjct: 283 NAPWSYMSGEKANEVATILVDDCGCNSTML 312


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 97  NSPWHHSFTYVPASVRIVRVNNCG*SGTLL 186
           N+PW +        V  + V++CG + T+L
Sbjct: 283 NAPWSYMSGEKANEVATILVDDCGCNSTML 312


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +1

Query: 175 GTLLATTSYILLVLV----SSGRLCSTRIGVLCFTTILASSPASVFLYS 309
           G  + TT  I L  V     +G    T+I  LC    L+++   V LYS
Sbjct: 709 GFTMYTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYS 757


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +1

Query: 175 GTLLATTSYILLVLV----SSGRLCSTRIGVLCFTTILASSPASVFLYS 309
           G  + TT  I L  V     +G    T+I  LC    L+++   V LYS
Sbjct: 799 GFTMYTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYS 847


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 480 FLNDHLATFRNLLADPLQLVTGEVSSRVCDFDSEGSTIT 596
           F  D LAT     ++   ++ GE+S     +DS+ ST T
Sbjct: 198 FGKDVLATDERSFSEHDSVMLGEISPHHEYYDSKSSTET 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,166
Number of Sequences: 438
Number of extensions: 4307
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)