Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F14
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   7.0  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    26   7.0  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   9.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   9.2  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 225 LENSLVMVLFYF*YNSNVSNHQVFYCACLRN 317
           ++N L   L YF  N  V NH +  CA L +
Sbjct: 693 IKNILFTTLEYFLTNDWVDNHLIILCASLHS 723


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 303 HSKKLDDYLHYYYIKNKITPSPKNFPAKSW 214
           H   LDD+L YYYI   +     +F A ++
Sbjct: 61  HFGCLDDFLRYYYIAVSVLIEASDFEALAY 90


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 264 IKNKITPSPKNFPAKSW 214
           ++N  +PS K+FP++SW
Sbjct: 36  LQNGCSPSDKHFPSQSW 52


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 426 SYATSTRWGPVLQMHRFLIPTFMA-RLAHLENWKLINCFANRHSKKLDDYLHYYYIKNKI 250
           SYA S R    L+  R+L  TF++ +    E  ++   F++     +D+Y+ +   +N I
Sbjct: 140 SYAFSNRSSFSLRK-RYLWTTFLSLKGMGFEESEIFGAFSSIPIVSIDEYITWMITENLI 198

Query: 249 TPSPKN 232
              P N
Sbjct: 199 NSEPSN 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,656
Number of Sequences: 5004
Number of extensions: 45434
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)