Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F14
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0485 - 25578105-25578124,25578231-25578471,25579519-25579578     29   5.5  
08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713...    28   7.2  
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546     28   7.2  
01_06_1820 + 40120861-40120863,40122484-40122612,40122710-401228...    28   9.6  

>04_04_0485 - 25578105-25578124,25578231-25578471,25579519-25579578
          Length = 106

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 450 VALMKVGTSYATSTR-WGPVLQMHRFLIPTFMARLAHLENWKLINCFANRHSKKL 289
           +A + + T++  +T+ WG     + F++PT + R+ H + W  ++ +     K L
Sbjct: 24  LAPVAMHTAHRLATKGWGDFDPAYTFMLPTLLLRMIHNQIWISLSRYQTARRKHL 78


>08_02_1328 +
           26170248-26170493,26170702-26170798,26171325-26171342,
           26171566-26171666,26173486-26173562,26173736-26173802,
           26176467-26176577,26176652-26176749,26176834-26176903
          Length = 294

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 737 TSGSGRCGCRCNQTRHPTRTGGLPSEAXK-DPRRWSTDVSGIVFTAHEELRERENQETVL 561
           TS S RC CRC  T   +  G    +  +   R W+   +       ++ ++ EN++ V+
Sbjct: 20  TSSSSRCRCRCRITTSSSAHGWSNCQGWRLHHRVWAAQAADQQGGVQQQQQQEENEDGVV 79


>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
          Length = 532

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 381 RFLIPTFMARLAHLENWKLINCFANRH 301
           R ++P F A   H E+W++ N F  R+
Sbjct: 97  RSVLPKFYAEDVHPESWRVFNSFGKRY 123


>01_06_1820 +
           40120861-40120863,40122484-40122612,40122710-40122895,
           40123679-40123867,40124229-40124563,40124977-40125400
          Length = 421

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 699 DEASNSHRRLTLRGSKGSTSLEHRRFW 619
           D  S  H RLTLR  KG     HRRF+
Sbjct: 261 DHRSQIHHRLTLRARKGQV---HRRFY 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,576,850
Number of Sequences: 37544
Number of extensions: 301726
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)