Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F14
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    30   1.6  
AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical ...    30   1.6  

>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
            protein.
          Length = 2427

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 420  ATSTRWGPVLQMHRFLIPTFMARLAHL-ENWKLINCFANRHSKKLDDYL--HYY 268
            + S+    ++Q   FL P    +LA L +NW+++   A +    LDD L  H Y
Sbjct: 859  SVSSAANDMIQQGHFLAPEIRDKLAQLRDNWRILKSKAEKRRTDLDDSLQAHQY 912


>AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical
           protein F52H2.7 protein.
          Length = 875

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 762 MRCXRLEDH*WLGSLRLPVQSDEASNSHRRLTLRGS 655
           +RC +  D+ WL  +R P  ++EA  +  R+T+R S
Sbjct: 177 IRCEKDPDYEWLDKIRTPRATNEARQNAIRVTMRDS 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,535,888
Number of Sequences: 27780
Number of extensions: 270552
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)