Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_E20
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    25   7.3  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   7.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.3  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   9.6  

>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 253 LGTGQKCIYPLTCFMFYS 306
           +GTG  CIYPL     YS
Sbjct: 82  IGTGASCIYPLLGCRMYS 99


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 420 FFSTHIPTLSCVLGLQHA-LLDQGLEVLTDIISRTKPGNTIEHKTGQWVYAFLACTQLPL 244
           F    IP   C+L + +A L+  G+++     +R    +TI + T    + FL C   PL
Sbjct: 199 FKDLSIPDPYCILPIINAGLMFSGMQM-----NRANTASTIGNSTNWRTFFFLCCLLSPL 253

Query: 243 LS 238
           L+
Sbjct: 254 LT 255


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 290 VLCSIVLPGFVLLIISVSTSKPWSSNACCNPSTHDNVGI 406
           V+C  V  G +L II +  SK     +  NPS HDN  +
Sbjct: 127 VICLHVYQG-LLTIIPIFKSKKRFMTSHNNPSLHDNFSV 164


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 140 GVAAVIAFSSSGFSLNLIXAHFRAKFLRILVVSDNRGSWVQAKNA 274
           GV   I  + +GF   L    FRA++  IL  S  RG +V+AK A
Sbjct: 688 GVLEGIRIAQTGFPNKLFYTEFRARY-GILSQSLKRG-YVEAKKA 730


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 399 TLSCVLGLQHALLDQGLEVLTDIISRTKPGNTIEHKTG 286
           +LS VLG    +   GL  +  ++S   P +   HK G
Sbjct: 80  SLSSVLGAPSVVYSSGLAAIYGLLSYLNPKHIAVHKPG 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,571
Number of Sequences: 5004
Number of extensions: 50557
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)