Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_E20
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB037701-1|BAB03508.1| 265|Homo sapiens SMN interacting protein... 82 1e-15
BC104968-1|AAI04969.1| 280|Homo sapiens survival of motor neuro... 77 6e-14
AJ250932-1|CAC16117.2| 269|Homo sapiens survival interacting pr... 77 6e-14
AF027150-1|AAB82297.1| 280|Homo sapiens survival of motor neuro... 77 6e-14
AB037702-1|BAB03509.1| 250|Homo sapiens SMN interacting protein... 51 4e-06
>AB037701-1|BAB03508.1| 265|Homo sapiens SMN interacting
protein1-beta protein.
Length = 265
Score = 82.2 bits (194), Expect = 1e-15
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 6/194 (3%)
Frame = -3
Query: 645 DYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADFSETRMYISRLLSKRXXXXXXX 466
D K QS + PE PT++WQ QVA FS R +++ S
Sbjct: 72 DPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDS 131
Query: 465 XXXXXKPTCVIEWKQFFSTHIPTLSCVLGL---QHALLDQGLEVLTDII---SRTKPGNT 304
K WK+F +G + +D +T ++ S
Sbjct: 132 NVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNESPGIDYVQATVTSVLEYLSNWFGERD 191
Query: 303 IEHKTGQWVYAFLACTQLPLLSDTTSILRNLARKCAXIRFRLNPDEENAITAATPLNIFI 124
+ G+W+YA LAC + PLL + S++R LAR+C+ +R ++ ++ + A LN+ I
Sbjct: 192 FTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPA---LNLLI 248
Query: 123 CLVARYFRQYDLAD 82
CLV+RYF Q DLAD
Sbjct: 249 CLVSRYFDQRDLAD 262
>BC104968-1|AAI04969.1| 280|Homo sapiens survival of motor neuron
protein interacting protein 1 protein.
Length = 280
Score = 77.0 bits (181), Expect = 6e-14
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 23/211 (10%)
Frame = -3
Query: 645 DYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADFSETRMYISRLLSKRXXXXXXX 466
D K QS + PE PT++WQ QVA FS R +++ S
Sbjct: 72 DPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDS 131
Query: 465 XXXXXKPTCVIEWKQFF--------STHIPTLSCVLGLQHALLDQGLEVLTDIISRTKPG 310
K WK+F P + G+ + + G L I+SR
Sbjct: 132 NVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNESPGIDYVQI--GFPPLLSIVSRMNQA 189
Query: 309 ---NTIEH------------KTGQWVYAFLACTQLPLLSDTTSILRNLARKCAXIRFRLN 175
+ +E+ + G+W+YA LAC + PLL + S++R LAR+C+ +R ++
Sbjct: 190 TVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVD 249
Query: 174 PDEENAITAATPLNIFICLVARYFRQYDLAD 82
++ + A LN+ ICLV+RYF Q DLAD
Sbjct: 250 SKDDERVPA---LNLLICLVSRYFDQRDLAD 277
>AJ250932-1|CAC16117.2| 269|Homo sapiens survival interacting
protein 1 protein.
Length = 269
Score = 77.0 bits (181), Expect = 6e-14
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 23/211 (10%)
Frame = -3
Query: 645 DYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADFSETRMYISRLLSKRXXXXXXX 466
D K QS + PE PT++WQ QVA FS R +++ S
Sbjct: 61 DPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDS 120
Query: 465 XXXXXKPTCVIEWKQFF--------STHIPTLSCVLGLQHALLDQGLEVLTDIISRTKPG 310
K WK+F P + G+ + + G L I+SR
Sbjct: 121 NVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNESPGIDYVQI--GFPPLLSIVSRMNQA 178
Query: 309 ---NTIEH------------KTGQWVYAFLACTQLPLLSDTTSILRNLARKCAXIRFRLN 175
+ +E+ + G+W+YA LAC + PLL + S++R LAR+C+ +R ++
Sbjct: 179 TVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVD 238
Query: 174 PDEENAITAATPLNIFICLVARYFRQYDLAD 82
++ + A LN+ ICLV+RYF Q DLAD
Sbjct: 239 SKDDERVPA---LNLLICLVSRYFDQRDLAD 266
>AF027150-1|AAB82297.1| 280|Homo sapiens survival of motor neuron
protein interacting protein 1 protein.
Length = 280
Score = 77.0 bits (181), Expect = 6e-14
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 23/211 (10%)
Frame = -3
Query: 645 DYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADFSETRMYISRLLSKRXXXXXXX 466
D K QS + PE PT++WQ QVA FS R +++ S
Sbjct: 72 DPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDS 131
Query: 465 XXXXXKPTCVIEWKQFF--------STHIPTLSCVLGLQHALLDQGLEVLTDIISRTKPG 310
K WK+F P + G+ + + G L I+SR
Sbjct: 132 NVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNESPGIDYVQI--GFPPLLSIVSRMNQA 189
Query: 309 ---NTIEH------------KTGQWVYAFLACTQLPLLSDTTSILRNLARKCAXIRFRLN 175
+ +E+ + G+W+YA LAC + PLL + S++R LAR+C+ +R ++
Sbjct: 190 TVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVD 249
Query: 174 PDEENAITAATPLNIFICLVARYFRQYDLAD 82
++ + A LN+ ICLV+RYF Q DLAD
Sbjct: 250 SKDDERVPA---LNLLICLVSRYFDQRDLAD 277
>AB037702-1|BAB03509.1| 250|Homo sapiens SMN interacting protein
1-gamma protein.
Length = 250
Score = 50.8 bits (116), Expect = 4e-06
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 23/176 (13%)
Frame = -3
Query: 645 DYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADFSETRMYISRLLSKRXXXXXXX 466
D K QS + PE PT++WQ QVA FS R +++ S
Sbjct: 72 DPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDS 131
Query: 465 XXXXXKPTCVIEWKQFF--------STHIPTLSCVLGLQHALLDQGLEVLTDIISRTKPG 310
K WK+F P + G+ + + G L I+SR
Sbjct: 132 NVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNESPGIDYVQI--GFPPLLSIVSRMNQA 189
Query: 309 ---NTIEH------------KTGQWVYAFLACTQLPLLSDTTSILRNLARKCAXIR 187
+ +E+ + G+W+YA LAC + PLL + S++R LAR+C+ +R
Sbjct: 190 TVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVR 245
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,055,601
Number of Sequences: 237096
Number of extensions: 1608720
Number of successful extensions: 2946
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2942
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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