Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_E20
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.28 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.84 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.9  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   5.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 341 STSKPWSSNACCNPSTHDNVGIWVLKNCFHSITQV 445
           S +  W++  C NP   D++  W+     H+  +V
Sbjct: 100 SCNNYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKV 134


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 415 EELFPFNYTGWF--YFYNINIVFPYF 486
           E + P NY+GW+  + YN+     YF
Sbjct: 198 EYIIPANYSGWYLNHDYNLENKLNYF 223


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 415 EELFPFNYTGWFYFYNINI 471
           E + P NY+GW+  ++ N+
Sbjct: 198 EYIIPANYSGWYLNHDYNL 216


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 397 IIMRAWITTCITRPRFRS 344
           + +  WIT C+    FRS
Sbjct: 323 VTLSIWITVCVLNVHFRS 340


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 438 VIEWKQFFSTHIPTLSCVL 382
           V++WK+ F  ++  L+C++
Sbjct: 105 VLDWKKIFDINLLGLTCMI 123


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 299 NIKQVNGYMHFWPVPNYLC 243
           N K V  +  +W VP ++C
Sbjct: 36  NNKTVREFNVYWNVPTFMC 54


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 108 YFRQYDLAD*ILINKNYQCMTCVKNI 31
           YF+QY L   ILI KN      V N+
Sbjct: 17  YFQQYCLHHKILIKKNKCNAFIVSNV 42


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 296 IKQVNGYMHFWPVPNYLCCLIQQVF 222
           +K+     HF P+ + +C L  +VF
Sbjct: 387 LKRHKEQQHFQPLNSAVCALCHKVF 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,719
Number of Sequences: 438
Number of extensions: 3548
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)