Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_E17
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    30   1.8  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 273 VNSRGDDYV*KTGKHLFVYI*NMFIDKLFRLQFFFIKNSVVKLGCFRKNK 124
           +NS G+  +   G  + VY+   +ID L R  +   +NSV+  GC    +
Sbjct: 441 INSCGNLTIPSFGDFVHVYLNGKYIDTLTRRYYNLTRNSVIIEGCLENEE 490


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = +2

Query: 8   LNFIIYRTKQQIKEKLTLKNEQQPIVTVKKKYFVLVWHFLFFLKQPNLTTEFLMKKN*RR 187
           +N  I   K+ +KE +  K  ++ ++    K+   +W+  +   + NL  E L+  +  +
Sbjct: 608 INRTIVMNKKNVKEFIKTKMNRKEMLDFIDKHISTLWYTRYIKDKENLKEEHLLNFDIYK 667

Query: 188 KSLSMN 205
           K  + N
Sbjct: 668 KHFNSN 673


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,705,910
Number of Sequences: 27780
Number of extensions: 206786
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)