Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_E16
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    31   0.20 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   4.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.7  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 67  VATTIVLCTYLNNVYITFVSEIRKSFCTERYY 162
           + TT+    Y+ ++  +++S+IR+ +CT  +Y
Sbjct: 104 IGTTVGFAAYMLDIVTSWLSDIRRGYCTSHWY 135


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 90  YLLKQCIHNVCIGNTKIIL 146
           YLLKQC+ N+ + N+ I L
Sbjct: 652 YLLKQCLSNISLSNSVISL 670


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 700 VSYRLF*FAAKKKQMVDYFHDYSSI 626
           + YRL  FA  K     Y HDYS I
Sbjct: 408 IPYRLQVFATAKVTFFQYLHDYSYI 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,084
Number of Sequences: 5004
Number of extensions: 70237
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)