Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_E16
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin...    29   5.4  

>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 58  ILHVATTIVLCTYLNNVYITFVSEIRKSFCTERYY 162
           ++H+ +TI +C    N+ I F+S+I    CT   Y
Sbjct: 259 LMHIPSTISMCAAFTNISIEFISQILS--CTISLY 291


>AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin
           protein 71 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 772 AYIRLHQKYTKQLFISNDVFMIMHVSYRLF*FAAKKKQMVDYFHDYS 632
           AY    + Y  Q   SN +     V++ +  F  ++ Q + YF+DY+
Sbjct: 181 AYSNDFEPYIVQNTFSNSILYKQQVTFAIIRFDTRQPQSIMYFNDYN 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,927
Number of Sequences: 27780
Number of extensions: 385544
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)