Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_E06
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0007 + 8892616-8892760,8893073-8893206,8893496-8893695,889...    29   4.5  
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311...    28   6.0  

>11_03_0007 +
           8892616-8892760,8893073-8893206,8893496-8893695,
           8893809-8894090,8894185-8894243,8894345-8894381,
           8894501-8894723,8894818-8894964,8895845-8895892
          Length = 424

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 563 VGLCFILTALPLLYV*NYFVLD*NKFAGD 649
           + +C+ILTAL  +Y   Y+ LD  +FAGD
Sbjct: 288 IAICWILTALIWMYFGLYYFLD--EFAGD 314


>12_02_1221 -
           27130321-27130491,27130616-27130664,27131120-27131188,
           27131845-27131939,27132032-27132121,27132885-27132968,
           27133122-27133211,27133310-27133624,27134184-27134399,
           27134736-27134774,27135337-27135408
          Length = 429

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 475 CCFHIVIKHYYNVCNSI**FGEKQHCLIIYRL 380
           CCFH   K YY + + +  FG +QHC   Y +
Sbjct: 375 CCFHGRRKQYY-LGSKVTCFGSEQHCAPKYSI 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,835
Number of Sequences: 37544
Number of extensions: 217160
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)