Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D22
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    31   0.18 
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.24 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.3  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    27   2.2  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   5.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.9  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    25   8.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.9  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 435 SSYFLQYFAAQSVHKSQNVPK--YDSFLPLTLSQEHSPHLHSPLPKQTSFSSDHGA 596
           S Y   Y + QS H+    P+  YDS    T S+EH+   H  +P   S  +  GA
Sbjct: 29  SFYESSYRSRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGA 84


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 453 YFAAQSVHKSQNVPKYDSFLPLTLSQEHSPHLHSPLPKQTSFSSD 587
           Y  A    +  N P   + LP+     HS HLHSP P   S  +D
Sbjct: 348 YSTASVPQQISNGPTAVNGLPMNSYTPHSNHLHSPSPNSNSGPTD 392



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +3

Query: 420 LQYT*SSYFLQYFAAQSVHKSQNVPKYDSFL-----PLTLSQEHSPHLHSPLPKQTSFSS 584
           +QY+  + F+  F     H S N+    + L     PL + Q++  H HSPL +  +   
Sbjct: 608 IQYSYPNTFVNRFPQNIHHPSANLLDASAALNPVQNPLLMPQQN--HEHSPLVRSDAALH 665

Query: 585 DHGAM 599
           DHG +
Sbjct: 666 DHGPL 670


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 513 PLTLSQEHSPHLHSPLPKQTSFSSDHGAMQSLLLTGHIQFGGDQPS*QLHLP 668
           P T +  H+P+L+S  PK  +++S H A +  +   HI      PS Q++ P
Sbjct: 697 PATTTVGHTPNLYS--PKTNTYNSRHMAYE--MTKSHINVISPGPSLQVNAP 744


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 547 KCGECSCDKVSGKNESYFGTF-CDLCTDCAAKYCKKY 440
           KC EC   ++  K   YF  F C +C  C  KY  KY
Sbjct: 115 KCFECDSIELDTK---YFDIFHCRVCHTCREKYPDKY 148


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 111 SVKTFHPMRVSKPINTIAEITLPTTIY 191
           S  T H  R+  P N +A ITLP+T++
Sbjct: 168 SPDTIHK-RIFPPTNLVANITLPSTLH 193


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 469 DCAAKYCKKYEDYVYCNY--LNEKAFCDQSFLNGKDTVVKIVN 347
           D AA   KK E  ++C    L  KA+  Q FL G D + KI+N
Sbjct: 544 DVAADLPKKSEQVLFCKLTPLQRKAY--QDFLQGSD-MQKILN 583


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 588 GQTRMRFASATGNVNVENVPVIKLAAKM 505
           GQT + +A    +V+ +NVP+ +LA+++
Sbjct: 6   GQTALAYAKVWHHVSAKNVPLGRLASQI 33


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -2

Query: 478 LCTDCAAKYCKKYEDYVYCNYLNEKAFCDQSFLNGKDT--VVKIVNSTEIINDNIQKATW 305
           L T+   +   KYE  VYC     + F    F+N   T  ++   N   IIN  +Q    
Sbjct: 680 LKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNFMSIINCLMQLRKV 739

Query: 304 C 302
           C
Sbjct: 740 C 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,201
Number of Sequences: 5004
Number of extensions: 71960
Number of successful extensions: 247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)