Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_D21
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 355 3e-99
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 71 2e-13
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 67 3e-12
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 39 0.001
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.32
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.99
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.3
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 7.0
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 9.2
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 355 bits (874), Expect = 3e-99
Identities = 173/204 (84%), Positives = 188/204 (92%)
Frame = -2
Query: 778 YFRDQEGQDVLLFIDXIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK 599
YFRD EGQDVLLFID IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKK
Sbjct: 288 YFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKK 347
Query: 598 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPN 419
GSITSVQA+YVPADDLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP
Sbjct: 348 GSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPR 407
Query: 418 IIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVA 239
I+G EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VA
Sbjct: 408 ILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVA 467
Query: 238 EVFTGHAGKLVPLEETIKGFSKIL 167
EVFTG G+LV L++TI+ F +IL
Sbjct: 468 EVFTGIEGRLVSLKDTIRSFKEIL 491
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3
Query: 162 GDYDHLPEVAFYMVGPIEEVVAKAETLAK 76
G +D LPE AFYMVG I++ V KAE +A+
Sbjct: 493 GKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 70.5 bits (165), Expect = 2e-13
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Frame = -2
Query: 766 QEGQDVLLFIDXIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGS 593
Q + VL + + + A EVSA +P GY + TD+ T+ ER + GS
Sbjct: 266 QTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGS 325
Query: 592 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI- 416
IT + + +P DD+T P P T + + R + IYP ++ L S SR+M I
Sbjct: 326 ITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIG 385
Query: 415 ---IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 254
+H +V+ + + + + +++G + LS+ED+L + K ++ F+SQ
Sbjct: 386 EGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 66.9 bits (156), Expect = 3e-12
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Frame = -2
Query: 778 YFRDQEGQDVLLFIDXIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI----- 614
Y+RDQ G++V + D R+ +A E+S L +P+ GY L + + ER
Sbjct: 344 YYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARC 402
Query: 613 --TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 440
+ ++G+++ V A+ P D +DP + T + L + +A+ +P+++ S
Sbjct: 403 LGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSY 462
Query: 439 SRIMDPNIIGAEH----YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARK 275
S+ ++ E +N R +++I+Q S+ +II ++G LSE DK+T+ A
Sbjct: 463 SKYINALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGI 522
Query: 274 IQR-FLSQ 254
I+ FL Q
Sbjct: 523 IKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 38.7 bits (86), Expect = 0.001
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 4/180 (2%)
Frame = -2
Query: 778 YFRDQEGQDVLLFIDXIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK 599
+FRD G+ L+ D + + A ++S LL R P Y + + ER
Sbjct: 284 WFRDN-GKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSP 342
Query: 598 ----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 431
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 343 KHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRV 402
Query: 430 MDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 251
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 403 GSAAQVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -2
Query: 583 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 410
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 409 AEHYNVARGVQKILQDYKSL 350
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.99
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -2
Query: 625 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 503
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 623 LHSTHVSSQSRLISYSRWDTTKQSRHF*SSLSETENV-VNEEQYILSFLITEI 778
LH + SS + Y W + + HF +++E N + ++Q+ SF++ +
Sbjct: 198 LHISFASSLTNEDEYQNWVSQDRESHFFKTMNEIINTKIQKDQFSESFIVDSL 250
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 607 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 470
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = -3
Query: 429 WTLILLELSTTMLH------VEFRKFFRTTNPCRTLLLFW 328
WTL+ L T + H ++ FF +PC L FW
Sbjct: 489 WTLVNAPLITNLTHETITSLLDQEAFFHGNSPCALLANFW 528
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 198 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 323
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,599
Number of Sequences: 5004
Number of extensions: 67677
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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