Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_D19
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 35 0.009
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 35 0.012
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 31 0.19
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 28 1.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 28 1.4
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 28 1.4
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 7.2
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 9.5
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 9.5
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 9.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.5
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 356 EILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKR 234
+IL +I L +DI+ L +TC +L + DD +WH R
Sbjct: 12 DILLEISTYLDYKDIVHLSETCKSLSYVFDDKTIWHRFCAR 52
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKRDYKKDPQ----- 213
+++ +P+EIL I L +LS TC K ++ D+ W + + D
Sbjct: 30 TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHFAGDQSQIFSP 89
Query: 212 LGNKDWKKQYV 180
LGN W+++Y+
Sbjct: 90 LGNGTWRQEYL 100
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 479 SMFRDLKNFAHTVKNNIISPVKS-SILKYYGYPSASLVGIPEEILWKILLNLPVEDILSL 303
S+ +++ +F HT ISP K+ + ++ + +L P +L + N P+E I S+
Sbjct: 574 SVAKEISHFVHTTNRKHISPKKAVTGQSWFDHQYENLASSPHPLLVGVFQNQPLEYIRSI 633
Query: 302 CKTCN 288
N
Sbjct: 634 IAEVN 638
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -3
Query: 431 IISPVKSSILKYYGYPSASLVGI------PEEILWKILLNLPVEDILSLCKTCNALKTMI 270
I++ SS+L + SLV + P EI ++IL L + + K +
Sbjct: 85 ILNNCSSSLLSFASSTLDSLVRLDFLSLLPVEISFRILSFLDARSLCQAAQVSKHWKELA 144
Query: 269 DDNCLWHEL 243
DD+ +WH +
Sbjct: 145 DDDVIWHRM 153
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 119 QFLTFDAQPVLYDYIHKYIFLHTVSSNLYFLAVDLFYSLFYTIHAINN--CHLSLFLVHY 292
+ + F Q +LY+ + FL T FL FY+L Y ++ + LF+VHY
Sbjct: 430 EIILFLWQAILYNKRFR-AFLITSPYATEFLTSIQFYALRYREDNEHSGLVRICLFIVHY 488
Query: 293 TFCRDLKCPQL 325
C + C +L
Sbjct: 489 LSCEKVLCEKL 499
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 110 NREQFLTFDAQPVLYDYIHKYIFLHTVSSN 199
+R +FLTF V + Y++ I LH SS+
Sbjct: 427 DRFEFLTFAGMEVYFSYLNTLIILHRPSSS 456
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 396 LWLP*CKLSGNTRRNFMEDIVEFTS*GHFKSLQNV 292
LW P ++GN +RN ++DI+ T+ ++ +Q +
Sbjct: 763 LWSP--TIAGNNKRNLLKDIIIHTA--KYRDMQRI 793
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 347 WKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKRDYKKDPQ-LGNKDWKKQYVEKY 171
W L N ++ + K N ++ +ID W + + + + LG DW+K Y E +
Sbjct: 273 WVTLYNSNLDQKQPVSKR-NLIRQLID----WERVQSKSIGVEKEKLGGGDWEKAYAEDF 327
Query: 170 IYECNHRAQVVRQMSETV 117
N Q ++++
Sbjct: 328 ADLINRAKQSTTNKNDSL 345
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 209 LAVDLFYSLFYTIHAINNCHLSLFLVHYTFCRDLKC 316
+ V +FY L N ++S +L+H++ R+ KC
Sbjct: 352 IVVGMFYGLCAIYETKNLQYVSSWLIHHSPSRNKKC 387
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 9.5
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = -3
Query: 623 NIPITVVMTPLGDTAIINAILKSLKMETHSTCLRITQYVVSSTVENVPSMFRDLKNFAHT 444
N IT+V T +++++A+ +SL CL + Q + +++ + L HT
Sbjct: 211 NHAITLVNT--SPSSVVDALCRSLA----ELCLGLVQEAIDASILSQQESSNSLDLVRHT 264
Query: 443 VKNNIISPVKSSILKY----YGYPSASL 372
N S V SS + YG PS L
Sbjct: 265 PPLNYTSSVDSSPQRMASDSYGRPSLHL 292
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 98 DSPYNREQFLTFDAQPVLYD 157
D PYN F+TF +LY+
Sbjct: 1172 DVPYNTRNFITFSIPRLLYE 1191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,914
Number of Sequences: 5004
Number of extensions: 61182
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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