Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_D19
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 32 0.41
AC026301-3|AAK68898.2| 332|Caenorhabditis elegans Hypothetical ... 31 0.54
AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical ... 31 0.71
AF022981-1|AAG24206.1| 455|Caenorhabditis elegans Hypothetical ... 30 1.2
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 30 1.6
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 30 1.6
U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006714-12|AAK29719.2| 305|Caenorhabditis elegans F-box a prot... 29 2.9
U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain (pr... 29 3.8
AF106573-1|AAC78152.2| 336|Caenorhabditis elegans Hypothetical ... 29 3.8
AF067220-9|AAC16977.1| 305|Caenorhabditis elegans Hypothetical ... 29 3.8
AC084154-9|AAK29865.1| 285|Caenorhabditis elegans F-box a prote... 29 3.8
AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical ... 29 3.8
Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical p... 28 5.0
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 28 5.0
AL033514-21|CAA22105.1| 288|Caenorhabditis elegans Hypothetical... 28 5.0
AF067616-1|AAC19191.2| 61|Caenorhabditis elegans Hypothetical ... 28 5.0
AF024499-2|AAT48621.1| 576|Caenorhabditis elegans Hypothetical ... 28 5.0
AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical ... 28 5.0
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 28 6.7
U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redunda... 28 6.7
U21318-1|AAC46669.1| 457|Caenorhabditis elegans Hypothetical pr... 28 6.7
U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic... 28 6.7
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 28 6.7
AF045643-6|AAC02593.2| 570|Caenorhabditis elegans Hypothetical ... 28 6.7
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81557-11|CAB04531.2| 319|Caenorhabditis elegans Hypothetical p... 27 8.8
Z81113-4|CAB03281.2| 388|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 27 8.8
U80846-2|AAC70887.3| 516|Caenorhabditis elegans Hypothetical pr... 27 8.8
U39994-2|AAB37017.1| 378|Caenorhabditis elegans Hypothetical pr... 27 8.8
AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical... 27 8.8
AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical... 27 8.8
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 27 8.8
AC199166-1|ABO33245.1| 343|Caenorhabditis elegans F-box a prote... 27 8.8
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKRDYKKDPQL 210
SL+ +P + ++L L D+L+ K C LKT ID N + + D+ D +
Sbjct: 18 SLLNLPLDTANQVLEKLDPLDLLASRKVCQGLKTAIDRNGISFDTITFDFSDDQSI 73
>AC026301-3|AAK68898.2| 332|Caenorhabditis elegans Hypothetical
protein Y54F10BM.7 protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 383 SASLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMID 267
SASL+ +P ++ +IL L D+L K C LK +D
Sbjct: 29 SASLIDLPLDVANQILEKLETFDLLRCRKVCRGLKNAVD 67
>AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical
protein C39B5.7 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 365 IPEEILWKILLNLPVEDILSLCKTCNALKTMIDDN 261
+P EI +IL LP D+LS K C +L++ +D +
Sbjct: 1 MPLEISDEILSKLPAMDLLSCRKVCKSLRSAVDQS 35
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 341 ILLNLPVEDILSLCKTCNALKTMIDDNCLWH 249
+L N P +DIL++ +C A ++ D LWH
Sbjct: 135 VLYNFPHDDILNIISSCQA--EVLKDIVLWH 163
>AF022981-1|AAG24206.1| 455|Caenorhabditis elegans Hypothetical
protein W03F9.1 protein.
Length = 455
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3
Query: 341 ILLNLPVEDIL---SLCKTCNALKTMIDDNCLWHELYKRDYKKDPQLGNKDWKKQYVEKY 171
I L LP IL + C +L +DD L E Y R Y+++ +LG D K VE Y
Sbjct: 384 IALRLPATIILDDPTGCSYVQSLTAPMDDPRLTKEFYTRTYEQNDELGINDMK---VENY 440
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -3
Query: 158 NHRAQVVRQMSETVPDYRDYPHVLGYVNNPLWDTI*INRMMLDYYISST 12
NHR QV + + + + + H+ G +N+PL+ I ++R+ Y+S +
Sbjct: 826 NHRVQVFDKNGQFIAKFGSFGHLPGQLNSPLF--IAVSRVTHHVYVSDS 872
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -3
Query: 158 NHRAQVVRQMSETVPDYRDYPHVLGYVNNPLWDTI*INRMMLDYYISST 12
NHR QV + + + + + H+ G +N+PL+ I ++R+ Y+S +
Sbjct: 826 NHRVQVFDKNGQFIAKFGSFGHLPGQLNSPLF--IAVSRVTHHVYVSDS 872
>U51993-3|AAB36853.2| 958|Caenorhabditis elegans Hypothetical
protein F56F10.4 protein.
Length = 958
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 272 IDDNCLWHELYK--RDYKKDPQLGNKDWKKQYVEKYIYECNHRAQVVRQM 129
I++N +W+ L + Y + Q+ +DW + +K + + NH+ RQ+
Sbjct: 411 IEEN-VWNRLESASKSYWETNQMSTRDWPLNFQKKIVTDANHQRASYRQV 459
>AC006714-12|AAK29719.2| 305|Caenorhabditis elegans F-box a protein
protein 63 protein.
Length = 305
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMID 267
SL+ +P E+ +L L + D+L K C AL+T +D
Sbjct: 18 SLLEMPLEVANLVLEKLELIDLLRARKVCTALRTAVD 54
>U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform c
protein.
Length = 912
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = -3
Query: 542 THSTCLRITQYVVSS--TVENVPSMFRDLKNFAHTVKNNIISPVKSSI---LKYY--GYP 384
T+ TC Y ++S T ++ +M ++++ H V+ ++SP+ S +YY YP
Sbjct: 800 TYYTCTDNVVYDITSWATCKSQRAMLKNMRAHTHNVQYRLLSPMNSDFDAQSQYYNSSYP 859
Query: 383 SAS 375
S+S
Sbjct: 860 SSS 862
>AF106573-1|AAC78152.2| 336|Caenorhabditis elegans Hypothetical
protein F52D2.1 protein.
Length = 336
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = -3
Query: 404 LKYYGYPSASLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMID 267
L+ G S++L+ +P +++ ++ L D+L L K C++LK+ ++
Sbjct: 25 LQNEGVMSSNLLDMPLDVINVVMGKLEPMDLLRLRKVCHSLKSAVN 70
>AF067220-9|AAC16977.1| 305|Caenorhabditis elegans Hypothetical
protein C33E10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDDN 261
+L+ +P E+L +I+ + + L+L K C L+ ++D+N
Sbjct: 17 TLIELPTEMLTEIIKRVNPINRLALRKVCRILRKIVDEN 55
>AC084154-9|AAK29865.1| 285|Caenorhabditis elegans F-box a protein
protein 13 protein.
Length = 285
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDD 264
+L+ +P EI +IL + D L+ K C +LKT +D+
Sbjct: 7 TLLDLPLEIANQILEKMEPMDRLTARKVCRSLKTAVDE 44
>AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical
protein Y59E1A.1 protein.
Length = 475
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = -3
Query: 404 LKYYGYPSASLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMID 267
L+ G S++L+ +P +++ ++ L D+L L K C++LK+ ++
Sbjct: 25 LQNEGVMSSNLLDMPLDVINVVMGKLEPMDLLRLRKVCHSLKSAVN 70
>Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical
protein F14F8.13 protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 155 DYIHKYIFLHTVSSNLYFLAVDLFYSLFYTIHAINNC-HLSLFLV 286
D H+ +TVS F+ F+ +FY +H + H+ LFL+
Sbjct: 83 DSSHQLALNNTVSDYFIFIYCFSFFIIFYILHVLQQTFHVILFLL 127
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 230 YKKDPQLGNKDWKKQYVEKY 171
+K D + KDWK++Y E+Y
Sbjct: 549 FKLDTEENQKDWKREYYEEY 568
>AL033514-21|CAA22105.1| 288|Caenorhabditis elegans Hypothetical
protein Y75B8A.21 protein.
Length = 288
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 365 IPEEILWKILLNLPVEDILSLCKTCNALKTMIDD 264
IPE IL KIL L + D L + KT +T +D+
Sbjct: 30 IPESILIKILEKLELIDRLVIRKTSKKFRTTVDN 63
>AF067616-1|AAC19191.2| 61|Caenorhabditis elegans Hypothetical
protein F29C4.4 protein.
Length = 61
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 146 VLYDYIHKYIFLHTVSSNLYFLAVDLFYSLFYTIHAIN 259
++Y +IHK I L V+ L F +DLF + F+ + A+N
Sbjct: 4 IVYFFIHKLIVL--VNKKL-FQPLDLFQTFFFCLKALN 38
>AF024499-2|AAT48621.1| 576|Caenorhabditis elegans Hypothetical
protein F42G2.4b protein.
Length = 576
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMID 267
+L+ +P ++ ++L L V D+L+ K C L++ +D
Sbjct: 16 TLLNLPLQVAEQVLEKLGVTDLLASRKVCRGLRSAVD 52
>AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical
protein F42G2.4a protein.
Length = 941
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMID 267
+L+ +P ++ ++L L V D+L+ K C L++ +D
Sbjct: 16 TLLNLPLQVAEQVLEKLGVTDLLASRKVCRGLRSAVD 52
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 122 FLTFDAQPVLYDYIHKYIFLHTVSSNLYFLAV 217
FL FD L+D K IF HT+ YF V
Sbjct: 171 FLNFDFVNELHDIDKKIIFQHTILKLTYFCGV 202
>U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redundant
with protein 1 protein.
Length = 936
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 365 IPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELY 240
+PEE+L K+ LP + +L+ + + + +W ELY
Sbjct: 165 LPEELLLKVFSFLPDKSLLACSSVSYRFNQISNSHEVWKELY 206
>U21318-1|AAC46669.1| 457|Caenorhabditis elegans Hypothetical
protein K03H9.3 protein.
Length = 457
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 284 LKTMIDDNCLWHELYKRDYKKDPQLGNKDWKKQYVEKYI 168
LKT +D+N + + + + K + G+ +K+YV+KYI
Sbjct: 333 LKTALDNNKMSEDQFIQLVLKSEKCGSSLVRKKYVDKYI 371
>U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic
protein protein 1 protein.
Length = 332
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 386 PSASLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMI--DDNCLWHEL 243
P S +P ++L +I LP++D+ S TC++ + +D+ +W L
Sbjct: 78 PEVSASRLPLKVLNQIFQYLPLKDLRSAMLTCHSWNNALSMEDSDIWQYL 127
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 374 LVGIPEEILWKILLNLPVEDILSLCKTCNALKTMID 267
L+ +P ++ +IL L ED+L+ K C L+T +D
Sbjct: 4 LLDMPLALVNQILEKLDPEDLLASRKVCQKLRTAVD 39
>AF045643-6|AAC02593.2| 570|Caenorhabditis elegans Hypothetical
protein F58H7.2 protein.
Length = 570
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 215 QLGNKDWKKQYVEKYIYECNHRAQVVRQMSETVPDYR 105
+L K W + + I E H + +RQM E + DYR
Sbjct: 411 RLLRKYWHHRRERQIIQELPHDTEEMRQMHEKIEDYR 447
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/102 (21%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Frame = -3
Query: 575 INAILKSLKMETHSTCLRITQYVVSSTVENVPSMFRDLKNFAHTVKNNIISPVKSSILKY 396
+ +++++++ ST + ++ +SSTV N+P M ++LK+ + ++ I ++++
Sbjct: 573 VKPVIEAIQLLRKSTKVPLS---ISSTVGNLPKMKKELKDLKNFIEGKKIKTKRAAVSVM 629
Query: 395 YGYPSA----SLVGIPEEILWK----ILLNLPVEDILSLCKT 294
+A S++G ++ + + L V D+ SLC T
Sbjct: 630 DQLKNASSQLSVLGSATRGIFSMNEALNMKLDVNDLKSLCST 671
>Z81557-11|CAB04531.2| 319|Caenorhabditis elegans Hypothetical
protein F59A1.7 protein.
Length = 319
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKRDYKKD 219
S+ +P +I+ K++ N+ D LSL K C + +++D + + D KD
Sbjct: 19 SMSNMPLDIIHKMVENVKPIDRLSLRKVCRNFREIVNDKDPGFKRLRLDLFKD 71
>Z81113-4|CAB03281.2| 388|Caenorhabditis elegans Hypothetical
protein T03F6.4 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 377 SLVGIPEEILWKILLNLPVEDI-LSLCKTCNALKTMIDDN 261
+L+ +P E+L K++ NLP DI + N + ++ N
Sbjct: 6 TLLNLPNEVLLKVIRNLPRHDIFFGVAHVNNRFRGLVQKN 45
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 365 IPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKRDYKKDP 216
+P E+ KIL NL D+L + + K + + + +W L ++K P
Sbjct: 125 LPVELGMKILHNLTGYDLLKVAQVSKNWKLISEIDKIWKSLGVEEFKHHP 174
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 365 IPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKRDYKKDP 216
+P E+ KIL NL D+L + + K + + + +W L ++K P
Sbjct: 127 LPVELGMKILHNLTGYDLLKVAQVSKNWKLISEIDKIWKSLGVEEFKHHP 176
>U80846-2|AAC70887.3| 516|Caenorhabditis elegans Hypothetical
protein K06A9.2 protein.
Length = 516
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 374 LVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHEL-YKR 234
L+ + E +L I L +D+L L AL+ D+ C W +L +KR
Sbjct: 2 LLHLNELVLDYIGKQLNAKDLLRLSMANKALRGFFDNECYWQKLMFKR 49
>U39994-2|AAB37017.1| 378|Caenorhabditis elegans Hypothetical
protein C48C5.1 protein.
Length = 378
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 122 FLTFDAQPVLYDYIHKYIFLHTVSSNLYFLAVDLFY 229
+L F Q +L+ Y + L V+ +YF++ LFY
Sbjct: 296 YLPFQLQRLLFFYFDNEVILTWVNQYMYFISGFLFY 331
>AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical
protein Y113G7B.5b protein.
Length = 327
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 407 ILKYYGYPSASLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDD 264
++K G PS S +P E ++KI+ + L++ K C L+ +IDD
Sbjct: 11 LMKISGPPSFS--DMPMETVYKIVGKVDPYSRLAVRKVCRNLRNVIDD 56
>AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical
protein Y113G7B.5a protein.
Length = 312
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 407 ILKYYGYPSASLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDD 264
++K G PS S +P E ++KI+ + L++ K C L+ +IDD
Sbjct: 11 LMKISGPPSFS--DMPMETVYKIVGKVDPYSRLAVRKVCRNLRNVIDD 56
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 365 IPEEILWKILLNLPVEDILSLCKTCNALKTMIDDNCLWHELYKRDYKKDP 216
+P E+ KIL NL D+L + + K + + + +W L ++K P
Sbjct: 127 LPVELGMKILHNLTGYDLLKVAQVSKNWKLISEIDKIWKSLGVEEFKHHP 176
>AC199166-1|ABO33245.1| 343|Caenorhabditis elegans F-box a protein
protein 6 protein.
Length = 343
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 404 LKYYGYPSASLVGIPEEILWKILLNLPVEDILSLCKTCNALKTMIDDN 261
+ + + S +L +P EIL ++L L D L+ K C +L+ + N
Sbjct: 32 MNFQDHISPTLSDMPTEILGQVLEKLKPVDQLTHLKICKSLRAAVVQN 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,104,457
Number of Sequences: 27780
Number of extensions: 337471
Number of successful extensions: 998
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -