Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D19
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    33   0.003
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    29   0.030
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.0  

>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 83  IQEHGDSPYNREQFLTFDAQPVLYDYIHKYIFLHTVSSNLYFLAVDLFYSLFYTIHAINN 262
           I E G  P  RE+FL ++  P   D +H +          + + + + YS+   +  + N
Sbjct: 16  IAEEGYVPSMREKFLGWNVPPEYSDLVHPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGN 75

Query: 263 C 265
           C
Sbjct: 76  C 76


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +2

Query: 83  IQEHGDSPYNREQFLTFDAQPVLYDYIHKYIFLHTVSSNLYFLAVDLFYSLFYTIHAINN 262
           I E G  P  RE+FL ++  P   D +  +          + + + + YS+   +  + N
Sbjct: 16  IAEEGYVPSMREKFLGWNVPPEYSDLVRPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGN 75

Query: 263 C 265
           C
Sbjct: 76  C 76


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 139 CVKCQKLFPIIGTIPMFLDM*IIPC 65
           C  C+K++  +G + M +    +PC
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPC 43


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 244 NSCHKQLSSIIVFSAL 291
           NSC   LS I++FS +
Sbjct: 322 NSCTSMLSGIVIFSVV 337


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 244 NSCHKQLSSIIVFSAL 291
           NSC   LS I++FS +
Sbjct: 375 NSCTSMLSGIVIFSVV 390


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 197 NLYFLAVDLFYSLFYTIHAINN 262
           +LY   V L ++  YT HA+ N
Sbjct: 366 SLYLTKVQLIHAGNYTCHAVRN 387


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 95  HVLGYVNNPLWD 60
           H+ GY NN  WD
Sbjct: 207 HMDGYTNNSKWD 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,092
Number of Sequences: 438
Number of extensions: 4300
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)