Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D18
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    28   0.93 
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   6.6  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   6.6  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   6.6  
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch...    25   8.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = -2

Query: 288 YKSVSAFAPICNPSACPWGVKAFSGYL-GEDKSKWAEWDATELVKKYNGPPLTLLLDQGS 112
           YK      P   P+   W   A+   L G  ++K   W  T+    YN   +  +L+  +
Sbjct: 59  YKEKKTTVPSIEPNEAVWKYGAWLVDLPGHPRAK--RWITTKFSGNYNVKAVVFVLNSAT 116

Query: 111 GDKFYLEKQLLPENLVEACRSVGVPVILQLRDGYD 7
            D+   E  L+  + +  CR   VP +L   + +D
Sbjct: 117 IDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 585 RYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 484
           RY  + G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 606 ITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWD--FGVSAGFYLDATNEPWNNNYR 433
           I+ SGF++Y   +      PD  P  V  +  +  WD  F VS G +   +     +  R
Sbjct: 308 ISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFKQVSFVNNISTIR 367

Query: 432 MGSYLN 415
            G+++N
Sbjct: 368 GGTHVN 373


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 561 IVVGPDTSPRGVKIDGDDSSWDFGVSA 481
           +++    S R + I G+D+ W  G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 386 AFKIKSYNSTFK*L-PIL*LLFHGSFVASK*KPALTPKSHDESSP 517
           A + K+Y +  K L PIL  LF+GS+ +SK K  LT +      P
Sbjct: 98  ASRNKNYGTEKKPLNPILGELFYGSWDSSKGKVELTAEQVSHHGP 142


>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 149

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 231 VKAFSGYLGEDKSKWAEWDATELVKKYNGPPLTLLLD 121
           VK     LG DK K   + A   V+  N  P+T+L D
Sbjct: 110 VKTLGESLGSDKIKKGVFGAMMNVQLVNNGPVTILYD 146


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 479 PALTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPD 598
           P L+        PSI++     S P++  P S++ L  PD
Sbjct: 120 PTLSTTDEQPKEPSIISISSSSSDPSSSPPPSSSLLKTPD 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,031
Number of Sequences: 5004
Number of extensions: 55700
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)