Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_D18
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0130 + 41262652-41262798,41262958-41263056,41263155-412632... 130 6e-31
01_07_0129 + 41243686-41243853,41243936-41244053,41245485-412455... 65 5e-11
12_02_1237 + 27245411-27245842 32 0.42
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 32 0.42
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 31 0.96
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210... 28 6.8
01_06_0257 + 27932119-27932187,27932371-27932470,27932560-279326... 28 6.8
11_04_0296 + 15992285-15992385,15992792-15993011 27 8.9
06_01_0812 - 6151394-6151574,6151856-6151953,6152648-6152725,615... 27 8.9
05_07_0101 - 27690927-27691208,27691695-27692474 27 8.9
>01_07_0130 +
41262652-41262798,41262958-41263056,41263155-41263220,
41264073-41264255
Length = 164
Score = 130 bits (315), Expect = 6e-31
Identities = 61/106 (57%), Positives = 75/106 (70%)
Frame = -2
Query: 321 ALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFSGYLGEDKSKWAEWDATELVKKYNGP 142
AL L+N +YKSVSAF+P+ NP CPWG KAFS YLG KS W E+DAT L+KK N
Sbjct: 37 ALTIYLKNTDKYKSVSAFSPVVNPINCPWGQKAFSNYLGPAKSDWKEYDATCLIKKCNKI 96
Query: 141 PLTLLLDQGSGDKFYLEKQLLPENLVEACRSVGVPVILQLRDGYDH 4
+L+DQG DKF L KQLLP N EAC++VG P+ L+++ GYDH
Sbjct: 97 STPILIDQGEDDKF-LAKQLLPRNFEEACKAVGAPLTLRMQPGYDH 141
>01_07_0129 +
41243686-41243853,41243936-41244053,41245485-41245532,
41245756-41245787
Length = 121
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -2
Query: 615 QXFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGV 487
+ F+TK+G QR AA HG+ +V PDTSPRG+ I+G+ SWDFGV
Sbjct: 69 ENFVTKAGAQRAAAAHGIALVAPDTSPRGLNIEGEADSWDFGV 111
>12_02_1237 + 27245411-27245842
Length = 143
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 504 SWDFGVSAGFYLDATNEPWNNN 439
++DFG+ AGF++ TN P+N +
Sbjct: 42 AYDFGIPAGFFVPGTNNPYNGD 63
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 504 SWDFGVSAGFYLDATNEPWNNNYRMGSYLN 415
SW +G+ G Y + N PW +N +++N
Sbjct: 1287 SWQYGLDQGLYSEGKNYPWFSNGSSNAFIN 1316
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 228 KAFSGYLGEDKSKWAEWDATELVKKYNGPPLTLLL 124
K F ++ KW+E+D+ +K NG P+ LLL
Sbjct: 180 KRFDSFMLSHGFKWSEFDSCVYIKFVNGSPIYLLL 214
>02_01_0314 +
2106976-2107658,2107792-2107931,2108367-2108636,
2109938-2110254
Length = 469
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 507 SSWDFGVSAGFYLDATNEPWN 445
SSWD V GF AT PW+
Sbjct: 297 SSWDNPVPGGFKFTATKAPWS 317
>01_06_0257 +
27932119-27932187,27932371-27932470,27932560-27932666,
27933619-27933621,27933833-27933866,27934081-27934229,
27934676-27934822,27935019-27935129,27935548-27935647,
27936115-27936165,27937297-27937334,27937448-27937540,
27937744-27937827,27939101-27939262
Length = 415
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 GLLQNGMLPPNSQEVTASLNK-IYHHF 116
GLLQNG + P +E+ + NK ++ H+
Sbjct: 100 GLLQNGSITPAREEIRMNFNKLVFAHY 126
>11_04_0296 + 15992285-15992385,15992792-15993011
Length = 106
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 546 DTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMG 427
D PRG +I + G AG Y T EP +NYRMG
Sbjct: 32 DNRPRGGRICTTSNLVASGSIAGDY--GTGEPTAHNYRMG 69
>06_01_0812 -
6151394-6151574,6151856-6151953,6152648-6152725,
6153476-6153586
Length = 155
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 260 FVIQVLVHGE*KLLVDIWEKI-RVNGQNGMPQSWLRNTMGL 141
++ ++L+ + L D +K+ + N Q+G P SW R T GL
Sbjct: 45 YIYELLITNQIASLFDGSKKVVKCNIQDGGPNSWRRRTEGL 85
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 482 ALTPKSHDESSPSILTPRGEVSGPTTITPC 571
A+T S E P + P+G +GP + PC
Sbjct: 3 AITAPSSIEHIPLVRCPKGANAGPQAVIPC 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,306,982
Number of Sequences: 37544
Number of extensions: 360751
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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