Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D18
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-5|CAB60384.2|  280|Caenorhabditis elegans Hypothetical ...   186   8e-48
AL110500-23|CAB63414.1|  280|Caenorhabditis elegans Hypothetical...   186   8e-48
Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    28   4.6  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    28   4.6  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    28   4.6  
AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AL132847-5|CAB60384.2|  280|Caenorhabditis elegans Hypothetical
           protein Y48G10A.1 protein.
          Length = 280

 Score =  186 bits (454), Expect = 8e-48
 Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 1/203 (0%)
 Frame = -2

Query: 609 FITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRM 430
           F+ KSGFQ++A++H ++VV PDTSPRGV +DGD  SWDFG  AGFY++AT E W  NYRM
Sbjct: 61  FMEKSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRM 120

Query: 429 GSYLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXGALVSTLRNPGQYKSVSAFAPICNP 250
             Y+  EL + ++ +    +D  +           GAL   LRN  +++S+SAFAPICNP
Sbjct: 121 YDYIVKELLEEVVPSVA-PIDLAKIGIFGHSMGGHGALTIGLRNSSKFQSISAFAPICNP 179

Query: 249 SACPWGVKAFSGYLG-EDKSKWAEWDATELVKKYNGPPLTLLLDQGSGDKFYLEKQLLPE 73
              PWG KA +GYLG EDKS W ++DA+E++K Y+GP   +L+DQG+ D F    QL PE
Sbjct: 180 ITVPWGQKALTGYLGDEDKSTWNQYDASEVLKAYSGPKREILVDQGAADNFL--AQLKPE 237

Query: 72  NLVEACRSVGVPVILQLRDGYDH 4
            L          ++++++  +DH
Sbjct: 238 TLKS---KENAEIVVRMQAEFDH 257


>AL110500-23|CAB63414.1|  280|Caenorhabditis elegans Hypothetical
           protein Y48G10A.1 protein.
          Length = 280

 Score =  186 bits (454), Expect = 8e-48
 Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 1/203 (0%)
 Frame = -2

Query: 609 FITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRM 430
           F+ KSGFQ++A++H ++VV PDTSPRGV +DGD  SWDFG  AGFY++AT E W  NYRM
Sbjct: 61  FMEKSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRM 120

Query: 429 GSYLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXGALVSTLRNPGQYKSVSAFAPICNP 250
             Y+  EL + ++ +    +D  +           GAL   LRN  +++S+SAFAPICNP
Sbjct: 121 YDYIVKELLEEVVPSVA-PIDLAKIGIFGHSMGGHGALTIGLRNSSKFQSISAFAPICNP 179

Query: 249 SACPWGVKAFSGYLG-EDKSKWAEWDATELVKKYNGPPLTLLLDQGSGDKFYLEKQLLPE 73
              PWG KA +GYLG EDKS W ++DA+E++K Y+GP   +L+DQG+ D F    QL PE
Sbjct: 180 ITVPWGQKALTGYLGDEDKSTWNQYDASEVLKAYSGPKREILVDQGAADNFL--AQLKPE 237

Query: 72  NLVEACRSVGVPVILQLRDGYDH 4
            L          ++++++  +DH
Sbjct: 238 TLKS---KENAEIVVRMQAEFDH 257


>Z49131-5|CAA88978.1|  217|Caenorhabditis elegans Hypothetical
           protein ZC373.6 protein.
          Length = 217

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -2

Query: 534 RGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSYLNVELYDLILKAFCNVVDPNR 358
           +G+ I G    +   +S G+   +T +P+N N+       V++ D  +  F  V+ P R
Sbjct: 159 QGLDIHGGSGGYHRALSGGYLPPSTYDPYNVNWHSYGDEGVKMKDKAISVFRRVIAPGR 217


>Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical
           protein F49C12.5b protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 45  LQNGMLPPNSQEVTASLNKIYHHFPDLVV 131
           L+N M+ PN Q++ A L  I H++ DLVV
Sbjct: 381 LENMMMKPNIQKIFAQLPDI-HYYTDLVV 408


>Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical
           protein F49C12.5a protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 45  LQNGMLPPNSQEVTASLNKIYHHFPDLVV 131
           L+N M+ PN Q++ A L  I H++ DLVV
Sbjct: 408 LENMMMKPNIQKIFAQLPDI-HYYTDLVV 435


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 HIIQHSNNCPFCNYYSMVHLWHLNKNR 482
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 HIIQHSNNCPFCNYYSMVHLWHLNKNR 482
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 HIIQHSNNCPFCNYYSMVHLWHLNKNR 482
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 HIIQHSNNCPFCNYYSMVHLWHLNKNR 482
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 HIIQHSNNCPFCNYYSMVHLWHLNKNR 482
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 661 HLLECPHNCPTNIYSLMVECWHENIER 687


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 HIIQHSNNCPFCNYYSMVHLWHLNKNR 482
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 402 HIIQHSNNCPFCNYYSMVHLWHLNKNR 482
           H+++  +NCP   Y  MV  WH N  R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846


>AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.7 protein.
          Length = 124

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 227 KLLVDIWEKIRVNGQNGMPQSWLRNTMGLLLHY 129
           K LVD+  ++  +G +G   SWL N  GLLL Y
Sbjct: 5   KALVDVLGQVNTSGVDG---SWLFNKEGLLLAY 34


>Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical
           protein F53F1.3 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 228 KAFSGYLGEDKSKWAEWDATELVKKYNGPPLTLLLDQGSGDKF-YLEKQLLPENLVEACR 52
           +AFS     +++  +    T L +KY+ P  T+LL   +  K   + K   PE L +  +
Sbjct: 194 QAFSSLARHNETLLSSEIITRLAEKYHVPKTTVLLSWATSQKVGIIPKSTNPERLAQNLK 253

Query: 51  SV 46
           +V
Sbjct: 254 TV 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,047
Number of Sequences: 27780
Number of extensions: 310949
Number of successful extensions: 898
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)