Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D18
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.6  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 90  KQLLPENLVEAC 55
           + ++PENLV+AC
Sbjct: 192 RNMVPENLVQAC 203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 543 TSPRGVKIDGDDSSWDFGVSAGFYLDATNEP 451
           T+P G +I+    + DFG  A F  +    P
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPATFTCNVRGNP 335


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 531 HVVKYQDLRQLHHVRLHT 584
           H V+ QD+ Q H + +HT
Sbjct: 383 HAVRNQDVVQTHVLTIHT 400


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 11  YPSRSCKMTGTPTERH 58
           YPS    + G P ERH
Sbjct: 196 YPSVEWDILGVPAERH 211


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 38 GTPTERHASTKFSG 79
          GTP E+   T FSG
Sbjct: 16 GTPEEKRPRTAFSG 29


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 209 KYPLKAFTPHGQALGLQIGAKALTDLY*PGFLRVETK 319
           K P+KA T    ++ +Q+G +    L+ P   ++  +
Sbjct: 59  KLPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAAR 95


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 387 PSKLNHIIQHSNNCPFCNYYSMV 455
           PS  +  +  S  CP+ +YYS +
Sbjct: 622 PSLNSTNVTLSTKCPYPSYYSYI 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,156
Number of Sequences: 438
Number of extensions: 4198
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)