Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D17
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   2.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   3.8  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    24   5.0  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.6  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    23   8.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.7  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +2

Query: 149 IVFLVFSVCE-GSLGLSILVSIIRSHGN---DYFQRFRIL 256
           ++ L+  + E G +G+SI+  +I  +GN   DYF   R+L
Sbjct: 130 LILLITMILEPGLIGISIMKRLIGDNGNDERDYFVENRLL 169


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 146 LIVFLVFSVCEGSLGLSILVSII 214
           +  FLVFS CE  +G S+   +I
Sbjct: 1   MFFFLVFSACEVFVGFSLCTLVI 23


>SPAC12B10.09 |||S-adenosylmethionine transporter
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 3  YIFCWSFNFLFLKINI 50
          Y+F  SF+FL+L +N+
Sbjct: 5  YVFSNSFSFLYLMVNV 20


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 155 FLVFSVCEGSLGLSILVSIIRSHGND 232
           F++F+ C   + LSI    IR+ GND
Sbjct: 262 FMLFAWCIYGILLSIFFKEIRADGND 287


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 246 LEYYNDKIFIYNNFYNSFMFLNS 314
           L + NDK  ++ N   S ++LNS
Sbjct: 126 LSFLNDKNIVHGNLQMSSVYLNS 148


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 255 YNDKIFIYNNFYNSFMFLNS 314
           YND  F+  NF++  M L S
Sbjct: 249 YNDHQFVKKNFFSIIMVLES 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,499
Number of Sequences: 5004
Number of extensions: 5947
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)