Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D17
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   8.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   8.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   8.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   8.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   8.4  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 267 IFIYNNFYNSFMFLNS 314
           + IYNN  NSF  L S
Sbjct: 211 LIIYNNSDNSFQRLTS 226


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 32  VSQNQHFFVVL 64
           +S+NQH FV L
Sbjct: 552 ISKNQHLFVEL 562


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 243 DLEYYNDKIFIYNNFYN 293
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 255 YNDKIFIYNNFYNSFMFLNSF 317
           YN+K    NN YN  ++  ++
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNY 120


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 243 DLEYYNDKIFIYNNFYN 293
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 267 IFIYNNFYNSFMFLN 311
           IFIYN+F   F   N
Sbjct: 103 IFIYNSFNTGFALGN 117


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 243 DLEYYNDKIFIYNNFYN 293
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,254
Number of Sequences: 438
Number of extensions: 459
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)