Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D16
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   113   2e-26
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...   111   9e-26
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   4.2  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   5.6  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   5.6  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.8  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  113 bits (273), Expect = 2e-26
 Identities = 56/168 (33%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
 Frame = -2

Query: 613 WRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKI 437
           ++T +GQ LD +T    + D S F+L +             + LPV+L + LA     + 
Sbjct: 157 FQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATPEN 216

Query: 436 YKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRT 257
            K AQDI + +G  FQ+QDD++DC+GD   TGK+GTDI + KC+W+   AL +CT  QR 
Sbjct: 217 LKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQRV 276

Query: 256 VFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 113
           +    YG  +    +R+K ++E+L++   +++ E++    I + I+ +
Sbjct: 277 ILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score =  111 bits (267), Expect = 9e-26
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 3/187 (1%)
 Frame = -2

Query: 607 TSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYK 431
           T +GQ  D ++  + +    SF L +             + LP+   LLL+ N ++K Y 
Sbjct: 163 TELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYD 222

Query: 430 SAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVF 251
           +   +   +G  FQ+QDD++DCFGD    GKVG DIQ+ KCTWL   A +  +  Q  + 
Sbjct: 223 TTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQLNLL 282

Query: 250 KACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RVLFKKL 77
           +A YG +   ++  IK+LY +L +P++Y   E  M D+I ++I+ I       + +F K 
Sbjct: 283 RAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCIFTKF 342

Query: 76  LDITYNR 56
             + Y R
Sbjct: 343 FQLIYKR 349


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 406 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 230
           IGT FQ+ DD +D    +   GK  G D++    T   + A ++  E    +       +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318

Query: 229 EPAHVERIKRLYE 191
            P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 217 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 125
           ++R ++  E++H+PQ+Y     + Y  I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 424 QDICLEIGTMFQIQDDFIDCFGDE 353
           Q +C+ IG M    DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 456 KMWMKKFINLLKTFAWK*ERCS 391
           K  +K+F NLLKTFA + ER +
Sbjct: 93  KRRIKRFRNLLKTFACRIERAN 114


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 387 IWNIVPISKQMS*ADL*IFSSTFSASS 467
           IWNIVP++ + S   L ++SS+F A++
Sbjct: 110 IWNIVPLNARWS--ALLLYSSSFMATT 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,695
Number of Sequences: 5004
Number of extensions: 57759
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)