Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D12
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 684 EDEEYKRVNFEKFTKLSTVFQKENGTVTAGNAST 583
           EDEE            +      N T+TAGNA+T
Sbjct: 202 EDEECTEATAGAVVLETCQRNSNNSTITAGNANT 235


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 641  FVNFSKLTLLYSSSSANITGAPLFC 715
            + N+S   L ++S    +  AP+ C
Sbjct: 1149 YTNYSMQVLAFTSGGDGVKSAPIHC 1173


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +1

Query: 652 FKINSFILFIFSKYYRSPSFLWNGYRY 732
           F++  ++  + S+Y +  S +W GY++
Sbjct: 616 FQLFLYVSPVSSEYNQYNSRIWGGYKF 642


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +1

Query: 652 FKINSFILFIFSKYYRSPSFLWNGYRY 732
           F++  ++  + S+Y +  S +W GY++
Sbjct: 616 FQLFLYVSPVSSEYNQYNSRIWGGYKF 642


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,852
Number of Sequences: 438
Number of extensions: 4226
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)