Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_D11
(617 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 286 4e-77
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 286 4e-77
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 286 4e-77
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 286 4e-77
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 286 4e-77
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 286 4e-77
AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7 va... 93 5e-19
BC125176-1|AAI25177.1| 577|Homo sapiens ACSM2A protein protein. 32 1.4
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 32 1.9
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 32 1.9
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 32 1.9
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 32 1.9
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 32 1.9
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 32 1.9
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 32 1.9
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 32 1.9
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 32 1.9
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 32 1.9
X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for ... 31 2.5
BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear ribonucle... 31 2.5
BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear ribonucle... 31 2.5
AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear ribonucle... 31 2.5
AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).). 31 4.3
AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear ribonucle... 30 5.7
BC126410-1|AAI26411.1| 516|Homo sapiens leucine rich repeat tra... 30 7.5
BC126408-1|AAI26409.1| 516|Homo sapiens leucine rich repeat tra... 30 7.5
AY182026-1|AAO67547.1| 516|Homo sapiens leucine-rich repeat tra... 30 7.5
AB007876-1|BAA24846.2| 529|Homo sapiens KIAA0416 protein. 30 7.5
BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein. 29 9.9
AJ512612-1|CAD54757.1| 925|Homo sapiens ABCA5 transporter protein. 29 9.9
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 286 bits (702), Expect = 4e-77
Identities = 138/187 (73%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
Frame = -2
Query: 583 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 407
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 406 PMPKLKAFQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 227
P+P+LK+FQKIQ+RLVRE EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 226 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 47
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKD 184
Query: 46 VTFEFPE 26
V FEFPE
Sbjct: 185 VNFEFPE 191
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 286 bits (702), Expect = 4e-77
Identities = 138/187 (73%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
Frame = -2
Query: 583 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 407
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 3 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 62
Query: 406 PMPKLKAFQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 227
P+P+LK+FQKIQ+RLVRE EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 63 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 122
Query: 226 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 47
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++
Sbjct: 123 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKD 182
Query: 46 VTFEFPE 26
V FEFPE
Sbjct: 183 VNFEFPE 189
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 286 bits (702), Expect = 4e-77
Identities = 138/187 (73%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
Frame = -2
Query: 583 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 407
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 406 PMPKLKAFQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 227
P+P+LK+FQKIQ+RLVRE EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 226 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 47
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKD 184
Query: 46 VTFEFPE 26
V FEFPE
Sbjct: 185 VNFEFPE 191
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 286 bits (702), Expect = 4e-77
Identities = 138/187 (73%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
Frame = -2
Query: 583 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 407
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 406 PMPKLKAFQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 227
P+P+LK+FQKIQ+RLVRE EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 226 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 47
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKD 184
Query: 46 VTFEFPE 26
V FEFPE
Sbjct: 185 VNFEFPE 191
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 286 bits (702), Expect = 4e-77
Identities = 138/187 (73%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
Frame = -2
Query: 583 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 407
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 406 PMPKLKAFQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 227
P+P+LK+FQKIQ+RLVRE EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 226 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 47
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKD 184
Query: 46 VTFEFPE 26
V FEFPE
Sbjct: 185 VNFEFPE 191
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 286 bits (702), Expect = 4e-77
Identities = 138/187 (73%), Positives = 163/187 (87%), Gaps = 1/187 (0%)
Frame = -2
Query: 583 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 407
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 406 PMPKLKAFQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 227
P+P+LK+FQKIQ+RLVRE EKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 226 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 47
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV+TF VYKKLTG++
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKD 184
Query: 46 VTFEFPE 26
V FEFPE
Sbjct: 185 VNFEFPE 191
>AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7
variant protein.
Length = 78
Score = 93.5 bits (222), Expect = 5e-19
Identities = 44/52 (84%), Positives = 49/52 (94%)
Frame = -2
Query: 244 SRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKV 89
SRTLT+V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHKV
Sbjct: 10 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKV 61
>BC125176-1|AAI25177.1| 577|Homo sapiens ACSM2A protein protein.
Length = 577
Score = 32.3 bits (70), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 72 TDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKS 206
T W ++ LCS++ W L CT + P L+ L T+S+ KS
Sbjct: 263 TGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 307
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 31.9 bits (69), Expect = 1.9
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -2
Query: 547 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 386
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 385 FQKIQIRLVREREKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 206
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 205 DLVFP 191
+ P
Sbjct: 823 QKIIP 827
>X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for U2
snRNP-specific A' protein. ).
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 526 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 359
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 358 REREKKFSGK 329
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 526 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 359
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 358 REREKKFSGK 329
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 526 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 359
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 358 REREKKFSGK 329
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 526 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 359
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 358 REREKKFSGK 329
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).).
Length = 255
Score = 30.7 bits (66), Expect = 4.3
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = -2
Query: 517 LVELETNSDLKAQLREL-YITKAKEIELHNK--KSIIIY-VPMPKLKAFQKIQIRLVRER 350
LVEL + D A L+ L Y++ + + + K + +IY VP ++ FQK++++ +E
Sbjct: 100 LVELG-DLDPLASLKSLTYLSILRNLVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
Query: 349 EKKFSGK 329
EK F GK
Sbjct: 159 EKMFKGK 165
>AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 30.3 bits (65), Expect = 5.7
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 526 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 359
+ +LVEL + D A L+ L + NKK +YV P ++ FQ+++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQRVKLKER 155
Query: 358 REREKKFSGK 329
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC126410-1|AAI26411.1| 516|Homo sapiens leucine rich repeat
transmembrane neuronal 2 protein.
Length = 516
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 148 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 65
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 85 SQLTWLHLDHNQISTV--KEDAFQGLYK 110
>BC126408-1|AAI26409.1| 516|Homo sapiens leucine rich repeat
transmembrane neuronal 2 protein.
Length = 516
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 148 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 65
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 85 SQLTWLHLDHNQISTV--KEDAFQGLYK 110
>AY182026-1|AAO67547.1| 516|Homo sapiens leucine-rich repeat
transmembrane neuronal 2 protein protein.
Length = 516
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 148 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 65
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 85 SQLTWLHLDHNQISTV--KEDAFQGLYK 110
>AB007876-1|BAA24846.2| 529|Homo sapiens KIAA0416 protein.
Length = 529
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 148 SQLIKVHLDKNQQTTIEHKVDTFQSVYK 65
SQL +HLD NQ +T+ K D FQ +YK
Sbjct: 98 SQLTWLHLDHNQISTV--KEDAFQGLYK 123
>BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein.
Length = 648
Score = 29.5 bits (63), Expect = 9.9
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 514 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVREREKK 341
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + E EKK
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKK 645
>AJ512612-1|CAD54757.1| 925|Homo sapiens ABCA5 transporter protein.
Length = 925
Score = 29.5 bits (63), Expect = 9.9
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = -2
Query: 538 ETSISQALVELETNSDLKAQLRE-----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKI 374
+TSI A+++L+TN L +L + T EI+ + I+IY+ + +
Sbjct: 177 QTSIDAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFXPFGYFL 236
Query: 373 QIRLVREREKK 341
I +V E+EKK
Sbjct: 237 AIHIVAEKEKK 247
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,387,324
Number of Sequences: 237096
Number of extensions: 1688141
Number of successful extensions: 3625
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3619
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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