Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_D10
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 71 2e-13
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095... 69 7e-13
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 31 0.31
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866 27 2.9
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 26 6.7
01_01_0267 + 2201404-2202501 26 6.7
11_06_0129 - 20397179-20397537,20397749-20400497 26 8.9
05_07_0144 - 28007477-28008412 26 8.9
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533... 26 8.9
>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
Length = 82
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = -1
Query: 274 MQNDAGEFVDLYCPRKCSASNRLIHXKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 95
MQN+ G+ VDLY PRKCSA+NR+I KDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 94 RMGESDDCIVRLTKK 50
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>03_05_0610 -
26108546-26108671,26108739-26108789,26109410-26109542,
26109633-26109682
Length = 119
Score = 69.3 bits (162), Expect = 7e-13
Identities = 35/75 (46%), Positives = 46/75 (61%)
Frame = -1
Query: 274 MQNDAGEFVDLYCPRKCSASNRLIHXKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 95
MQN+ G+ VDLY PRKCS +NR+I KDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 94 RMGESDDCIVRLTKK 50
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 282 HIKCRTTPVNSLTCTARGNARPATASST 199
H++CR+TP +SLT N PA++SS+
Sbjct: 81 HLRCRSTPRDSLTYNTLLNHLPASSSSS 108
>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
Length = 785
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 295 PCGRTYKMQNDAGEFVDLY-CPRKCSASNRLI 203
P G+ + Q D G ++L CP +CS + +L+
Sbjct: 255 PTGKDIQQQRDRGGPIELLVCPSRCSRTKQLV 286
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 325 RCFRICQFRVPCGRTYKMQNDAGEFV 248
+C + + R+ GRT +++D+GE V
Sbjct: 725 KCAYVRELRINLGRTVALEDDSGELV 750
>01_01_0267 + 2201404-2202501
Length = 365
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -2
Query: 342 K*IRPADAFASVNSVYRVD--VHIKCRTTPVNSLTCTARGNARPATASSTXRTM 187
K +R D S Y D + I C+ + T T G+ RP T+ + R +
Sbjct: 266 KGLRAGDTIVFSRSAYGPDKLLFIDCKKNNAAAATTTCAGDERPTTSGAEPRVV 319
>11_06_0129 - 20397179-20397537,20397749-20400497
Length = 1035
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 150 AGSTSAITSCTEAWSLXWMRRLLAEHFLGQYKSTNSPASFC 272
AGS+S+ + + +L + +L+ LG S NS + FC
Sbjct: 20 AGSSSSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFC 60
>05_07_0144 - 28007477-28008412
Length = 311
Score = 25.8 bits (54), Expect = 8.9
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 30 FLASIPSFFVNLTMQSSDSP---ILRIAPQTTYILDVSAARPVAGSTSAITSCTE 185
F + F++L+ SS SP ++APQTT I ++A V STSA + E
Sbjct: 29 FREEVAPGFLSLS-PSSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSASGTTAE 82
>02_05_1007 +
33452774-33452993,33453028-33453122,33453208-33453329,
33453392-33453694,33454657-33454918,33455039-33455140,
33455931-33457151,33457250-33457342
Length = 805
Score = 25.8 bits (54), Expect = 8.9
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 280 YKMQNDAGEFVDLYCPRKCSASNRLIHXKDHASVQLVIADVDPATGR-AADTSKMYVVCG 104
YK +D + DL+ P +C + + IH KD V L DV A AA + +V G
Sbjct: 82 YKQPSDP-QMKDLFLPFRCFCTRKDIHCKD---VVLDDHDVSKAIVEFAAHAAIEKLVVG 137
Query: 103 AIRRMG 86
A R G
Sbjct: 138 ATARGG 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,771,333
Number of Sequences: 37544
Number of extensions: 185804
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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