Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D03
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   162   5e-41
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.5  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  162 bits (393), Expect = 5e-41
 Identities = 92/219 (42%), Positives = 117/219 (53%), Gaps = 2/219 (0%)
 Frame = -2

Query: 690 GI*SGIXGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXGN 517
           G+ SGI G+    +IR EL  PGS  L G+ Q+YN  ++AH                 GN
Sbjct: 28  GLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGN 87

Query: 516 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXRIVENGAGTG*TVYPPLSSNIAHRG 337
            LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H G
Sbjct: 88  YLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSG 147

Query: 336 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXISFDQLPLFV*AVGITAFXXXXXXX 157
            ++DLAI SL L GISS                  +S  Q+PLF  A+ IT+        
Sbjct: 148 PAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLP 207

Query: 156 XLAGAITILLTDRNLNTSFFDPAGGGDPI*XQH*F*FFG 40
            LAG + +L +DRNLNTSF+ P GGGDP+  QH F FFG
Sbjct: 208 VLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFG 246


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 107 HHFLILLEEETQFEXNIDFDFLD 39
           +H++ +LE+E   +  I++DF+D
Sbjct: 487 NHYMFVLEQEEYTQERIEWDFID 509


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 448 TPTPLPYIINFKKNCRKWCRNRMNS 374
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,912
Number of Sequences: 5004
Number of extensions: 31521
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)