Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D02
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   4.3  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   5.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   5.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   9.8  
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    24   9.8  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 257  FKSYRHVYVHTPLNTH 304
            +K Y+H+Y+ TPL T+
Sbjct: 1061 YKCYQHLYLFTPLETN 1076


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 67  CIIDLKFISRLMLYVSDFYCK 5
           C+I +K   +L  YV  +YC+
Sbjct: 799 CVIGIKSFEKLQSYVFTYYCE 819


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 83  KYRSIANRDHSLLDIIKYSKSFYKRYYNTY 172
           KYRS+         I ++ KSFY++ ++T+
Sbjct: 167 KYRSVERIASLSRSISEFQKSFYEQVFDTF 196


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 116 LLDIIKYSKSFYKRYYNTYIKFI*KLSS 199
           LL I+KY K F  +Y   Y K + ++ S
Sbjct: 279 LLIILKYDKPFVTQYKEKYFKRVSRMIS 306


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 218 ELPFFEMNSIFI*ILCRYYNNVCKM 144
           EL   ++  +F+  L R +NNVC++
Sbjct: 81  ELGILDLIQVFVEALDRCFNNVCEL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,738
Number of Sequences: 5004
Number of extensions: 30422
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)