Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D02
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253...    30   0.79 
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    27   7.3  
02_01_0011 + 78277-78487,78594-79417                                   27   9.7  

>03_01_0325 +
           2529875-2529922,2530181-2530279,2530958-2531055,
           2531945-2532031,2532652-2532684,2532813-2532890,
           2533059-2533183,2533267-2533349,2533436-2533527,
           2533611-2533680,2533760-2533829,2533919-2534073
          Length = 345

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 301 CVERSMHINVPIGFEVCFNVXLDL 230
           CVER+MH N P+ FE  F+   D+
Sbjct: 203 CVERAMHHNCPVCFEYLFDSTKDI 226


>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -1

Query: 460 SLISSLG*TKAIFLXLSSSLMRPFLSNNL*DGVQTVKYFI 341
           S+I++L   KAI L    + M P+LSNNL +G     YF+
Sbjct: 638 SIIATLV-IKAINLITGRNGMAPWLSNNLNEGHYNYYYFL 676


>02_01_0011 + 78277-78487,78594-79417
          Length = 344

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 221 SNNQIKXYIKANFKSYRH-VYVHTP 292
           +NN I   IKANF  Y H  + HTP
Sbjct: 32  NNNGINTIIKANFPPYGHDFHNHTP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,491
Number of Sequences: 37544
Number of extensions: 136285
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)