Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D01
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   6.1  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.1  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   8.0  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 572 WHSNFVRIQPGFMRTCNTKPIV 507
           WH+   R+QP +   CN  P V
Sbjct: 84  WHAKLPRVQPFYAVKCNPDPKV 105


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 267 ISPCKCQPSISHCFVIWDV 211
           IS C+  P+ SHCF  W +
Sbjct: 550 ISSCQGDPNGSHCFEAWQL 568


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 433 WLFKR*IV----ISENIELMKF*TSIKVTHHCRIYEICTNLYQNYLY 305
           W+F R  +    +++N+E M F  +    H   +YE+C    +N  Y
Sbjct: 776 WIFHRLNIAAAAMNKNMEEMNFLQATSAVHQFWLYELCDVYIENSKY 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,924
Number of Sequences: 5004
Number of extensions: 56326
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)