Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_D01
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    29   2.7  
04_03_1034 - 21865633-21865811,21865838-21865860,21866345-218664...    29   4.8  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    28   8.4  

>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 393 SIFSEITIYLLNNQ*YLFQ*VLYSYSSYHNMIIWSIIMDNGFGVAG 530
           +I  E+ +Y+LN    L      +Y+ +  +IIW  ++ +GFG  G
Sbjct: 33  NIIEELKMYILNPVTLLENACSVTYTYFFMLIIWDEVLISGFGHKG 78


>04_03_1034 -
           21865633-21865811,21865838-21865860,21866345-21866433,
           21872484-21872894,21872968-21873284,21873389-21873467,
           21873539-21873903,21874484-21874656,21874824-21874913,
           21875797-21875862,21876615-21876661
          Length = 612

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 464 IFQLPQYDNMVNYYGQWVWCCR 529
           +FQ+ +Y N VN Y + VW C+
Sbjct: 64  VFQVREYLNRVNLYRERVWTCK 85


>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
            16362211-16362398,16362564-16363942,16364024-16365047,
            16365171-16365566,16367484-16367999,16368085-16368226,
            16369409-16369553,16371351-16371432,16371851-16371895,
            16372018-16372140
          Length = 1762

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 242  LFLIVLLFGT*TN*LAQSFYRCNSEFCALRDHTPLI 135
            LF +++L  T  N L+Q  Y+   + C L  H PL+
Sbjct: 963  LFWVIVLIYTELNILSQYIYQIVIQHCGLNIHIPLL 998


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,633
Number of Sequences: 37544
Number of extensions: 277823
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)