Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C21
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.2  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.4  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    25   7.4  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   9.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   9.7  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 271 GGRAHSPPGVKWLLEPIDIYN 209
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 373 PYIPLAPNSLRDSPLPEDSHPAAAGSRLRASTSPRNCSV 489
           P  P+A ++L     P D+ P+A+ S    +T  RN S+
Sbjct: 114 PLEPIASSALGTVEPPTDNKPSASTSTAVPTTEARNTSI 152


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 228  SSNHLTP-GGL*ARPPIYAIKIK*KRNISLIVSRLLLKHDHSQSRERIFSLYS 383
            S  HLTP   +  R PIY   +     + L  S  L+++ HSQ+ E+IF + S
Sbjct: 1211 SKYHLTPIPKIDIRYPIYKENVTIHTWMQLF-SLKLMEYAHSQNAEKIFGICS 1262


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 400 LRDSPLPEDSHPAAAGSRLRASTSP 474
           LRDS +P +SHP +  S     T P
Sbjct: 176 LRDSTIPANSHPQSLPSNSIPKTEP 200


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
          Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 79 PCGLTRGPATRQEIGTRDCLLR 14
          P G+T GP+   +  T DCL++
Sbjct: 22 PDGITAGPSNEDDFFTWDCLIQ 43


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 542 PLFLEPRAQSPLERQTQCTEQLRGEVEALNRDP 444
           P FL P AQS + R        R  ++ + RDP
Sbjct: 251 PDFLSPGAQSLIRRMIVADPMQRITIQEIRRDP 283


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 353 LRVIVL*EETRDYETYVSFLFYFYCVDGWTSSQ 255
           L V VL      +E YV F   + CV  W++S+
Sbjct: 73  LPVAVLLSPENAFELYVIFQSGYVCVHDWSNSE 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,339
Number of Sequences: 5004
Number of extensions: 43956
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)