Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C21
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical...    30   1.7  
Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z82282-9|CAB05281.2|  361|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical p...    29   3.9  

>AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical
           protein Y56A3A.31 protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +1

Query: 385 LAPNSLRDSPLPEDSHPAAAGSRLRASTSPRNCSVHCV*RSKGDCALGSRNKGVSR*RGP 564
           LA NS   SP      P+AA      ST P + +     ++KG  A   +   +SR RG 
Sbjct: 21  LASNSAGSSPPGAAGTPSAASQTPTTSTPPSSTTTTLTEQAKGVLAQLVKTSKMSRSRGS 80

Query: 565 RAGETP 582
              E P
Sbjct: 81  ALAEKP 86


>Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 320 DYETYVSFLFYFYCVDGWTSSQPTWR*VVTGAHRHLQRKCA 198
           DYE  +  +  +  VDGW  ++  W  V   A   +Q+K A
Sbjct: 240 DYEDLIEDIKTYREVDGWAKNETWWMDVTRIAEDEIQKKAA 280


>Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 320 DYETYVSFLFYFYCVDGWTSSQPTWR*VVTGAHRHLQRKCA 198
           DYE  +  +  +  VDGW  ++  W  V   A   +Q+K A
Sbjct: 240 DYEDLIEDIKTYREVDGWAKNETWWMDVTRIAEDEIQKKAA 280


>Z82282-9|CAB05281.2|  361|Caenorhabditis elegans Hypothetical
           protein T07G12.12 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 533 EIREFPANEDLVQARHHQXEQFRRTVLAPKRDVVXFDYFKQ 655
           E +  P N+D++       +  R TV+ P R    FDY  +
Sbjct: 171 EYQSLPPNDDVIMNETELMDVDRTTVMTPLRSPTFFDYHNE 211


>U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical
           protein F25B5.2 protein.
          Length = 757

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 564 RSSLAGNSLISGTESTISFGTSDAMY*TV 478
           R++L GNS IS    +I+ GTSD  Y T+
Sbjct: 442 RNTLTGNSSISSGVGSIASGTSDQGYGTI 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,507
Number of Sequences: 27780
Number of extensions: 261370
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)