Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_C20
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 72 1e-13
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 30 0.36
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435 28 1.5
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 28 1.9
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 4.5
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342... 27 4.5
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 26 5.9
07_03_0035 - 12677942-12678568 26 5.9
07_01_0738 + 5626062-5626862 26 5.9
06_01_0182 + 1413551-1413794,1413883-1414139,1414241-1414387,141... 26 5.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 26 5.9
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 26 7.8
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 71.7 bits (168), Expect = 1e-13
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = -3
Query: 296 SALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 132
+ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE +V DLI ++GSG
Sbjct: 11 AALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG 65
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 30.3 bits (65), Expect = 0.36
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 151 IRSRTLMPSKALANRPGQ----YGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TIGR 312
+R R + PS++L++ G YG+++ A K I S + +S++ R+ T+GR
Sbjct: 518 LRERVVQPSRSLSHASGTSALGYGTSAIVAMDKTAAISSDSSFSSNTLRLSQSKTVGR 575
>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
Length = 415
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -3
Query: 308 PIVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 168
P+V + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 163 PVVTAKITMVDLPLGATEDRVCGTIDIEKALTDGVKAFEPGLLAKANRGI 212
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 322 MNSAGRLFTLLSSWWMMMLP 263
+ S+ LF+++SSWWM LP
Sbjct: 24 VTSSPPLFSIISSWWMNPLP 43
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 206 MALHLQPPLSRWWKFSHQLRQHHHPPG*EQSKQSA 310
+ LH +P L W +F +QH P E ++A
Sbjct: 4466 LVLHFEPYLMNWSEFDQLQKQHEENPKDETLSKNA 4500
>01_06_1007 -
33733500-33733604,33733837-33733917,33734191-33734238,
33734364-33734549,33735148-33735678,33735823-33735864,
33735945-33736065,33736200-33736281,33737169-33737227,
33738492-33738564,33738694-33738913
Length = 515
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 196 VCSPKPWKASMSVT*SPTSALEWVLLRPLV 107
VC +P SP +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 180 GFGEQTWPIW--LYIYSRRFQDGGNFLTSYG 266
G G+ +W +Y +S + QDG NF+ G
Sbjct: 627 GAGKGLMTVWHAMYSHSSKIQDGSNFIDETG 657
>07_03_0035 - 12677942-12678568
Length = 208
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 202 GQVCSPKPWKASMSVT*SPTSALEWVLLRP 113
G V SP + A M SPT+A W LLRP
Sbjct: 96 GVVASPARFGAVMLA--SPTAANRWFLLRP 123
>07_01_0738 + 5626062-5626862
Length = 266
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 133 PEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSST 282
P+ L R RT++ K L Q T + A + P ATS+ST
Sbjct: 102 PDSPLASRIRTILTHKKLKKSMPQPTITFSTAVYHHARSTVPAAATSTST 151
>06_01_0182 +
1413551-1413794,1413883-1414139,1414241-1414387,
1414487-1414804
Length = 321
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 263 RQHHHPPG*EQSKQS 307
+QHHHPP +Q +Q+
Sbjct: 248 KQHHHPPARQQQQQA 262
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 254 HQLRQHHHPP 283
HQ R+HHHPP
Sbjct: 562 HQRRRHHHPP 571
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 182 LWRTDLANMALHLQPPLSRWWKFSHQLRQH 271
+W+TD H + L W F H+LRQH
Sbjct: 234 VWQTDCIARVSH-EDGLVVGWIFLHELRQH 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,923,659
Number of Sequences: 37544
Number of extensions: 150543
Number of successful extensions: 424
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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