Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C19
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        23   9.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   9.8  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    23   9.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    23   9.8  

>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 303 RVSVVTCLCGVAPELNQCHFVPGRIQSH-CVSRGSASVGRHL 181
           R+S+V  LC  APEL +   + G+   H   + G   V ++L
Sbjct: 119 RLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYL 160


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 162  PRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPEL 272
            P P   ++ G+R Q HAKR+   + L    +G+V ++
Sbjct: 906  PIPLDHEELGQRTQLHAKRD-VSTPLRSTESGIVDQV 941


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 236 VGYSPIAFRVGLHPSA 189
           V +SP+A R  LHPS+
Sbjct: 152 VYFSPLALRAHLHPSS 167


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 232 PTWHKMALV*FRSYTTQTRHHRNTMTDQCAS 324
           P  H + ++    Y   + H  NT+TD+ +S
Sbjct: 356 PATHLLKVIGSSPYVVHSNHTNNTLTDKESS 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,659
Number of Sequences: 5004
Number of extensions: 27594
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)