Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C14
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667...    71   7e-13
05_01_0139 + 929343-930188                                             32   0.56 
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658...    28   6.9  

>07_03_0823 +
           21765960-21766064,21766166-21766327,21766616-21766741,
           21766831-21766956,21767519-21767698,21768204-21768452
          Length = 315

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 29/73 (39%), Positives = 51/73 (69%)
 Frame = -3

Query: 733 ELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNV 554
           ++LR L+ +++ S D   LAVACYD+ ++++++P G+ ++  L  K RVM L++H++  V
Sbjct: 233 QILRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVVADLKAKDRVMKLMNHENAEV 292

Query: 553 RYEALLAVQKLMV 515
           R  ALL VQ+L +
Sbjct: 293 RKNALLCVQRLFL 305


>05_01_0139 + 929343-930188
          Length = 281

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 682 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 575
           ++ VA Y  G+  RH PRGKHI  +  L G    M LL
Sbjct: 95  MVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALL 132


>01_06_1815 -
           40064351-40064887,40064987-40065634,40065834-40065890,
           40065921-40065941,40066714-40066941
          Length = 496

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 742 RGQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPR 629
           R  E+LRTL+  L  +   V++  AC+  G Y+  Y R
Sbjct: 271 RDAEILRTLIDFLVSA---VIVMSACFGYGTYIYSYQR 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,929,332
Number of Sequences: 37544
Number of extensions: 338604
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)