Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C14
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.75 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.75 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 402 LIYNVMSYKFYALAPTTVPACLSICSFSSCLPRYS 506
           L+YN+MS KF       +P C    S     PR S
Sbjct: 346 LLYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRS 380


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 511 NWEYLGKQLEKEQIDKQAGTVVGAKA*NLYDITL 410
           +W Y G Q++ + + ++AG+ + AK  +L D  L
Sbjct: 178 SWTYNGAQVDLKHMKQEAGSNLVAKGIDLSDFYL 211


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 571 HDDPNVRYEALLAVQKLMVHNWEYLGKQLEKEQID 467
           H+D  +RY    +V      ++ YL ++LE+  +D
Sbjct: 275 HNDGRLRYWRTPSVVVSDYSDYSYLDEKLERNDLD 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,837
Number of Sequences: 438
Number of extensions: 4322
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)