Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C13
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    27   9.6  

>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 67  IKRLKQIEKYNHKTH*PHYQIVIIS*MSNIRLEIRLYVPN-GGIVFKV 207
           + RL +IEKY+H  H  + + +++   S   ++IR++  N  G++F+V
Sbjct: 163 LARLNKIEKYHH--HVKNNREILLRSQSLAAMKIRIFFENRKGLIFEV 208


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 668 IFFNEFYDSIIASVRLFCFNVNGLPT--ISNVLRYELYD 558
           IFF+    SI+ S++LF +N NG  +  IS   R  L D
Sbjct: 180 IFFSILVFSILISIKLFIWNTNGQSSNQISKANRLALLD 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,667,536
Number of Sequences: 27780
Number of extensions: 285987
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)