Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C13
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 683 YTLPRIFFNEFYDSIIASVR 624
           Y +P IF   FY  +++S+R
Sbjct: 229 YVIPLIFIILFYSRLLSSIR 248


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 683 YTLPRIFFNEFYDSIIASVR 624
           Y +P IF   FY  +++S+R
Sbjct: 229 YVIPLIFIILFYSRLLSSIR 248


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 22/64 (34%), Positives = 28/64 (43%)
 Frame = -2

Query: 350 LFNKLILTGNLLCGIFVLCFRKGMKWKRAILKTHRLLQGSSSALHLHTTLNTIPPLGTYR 171
           + N+L L+GN +  I  L FR     K   L  +  L     AL     L T+  LG   
Sbjct: 408 VLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNE-LTSVPDALRDLALLKTL-DLGE-N 464

Query: 170 RISN 159
           RISN
Sbjct: 465 RISN 468


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +3

Query: 84  DRKI*SQDSLTALPNSNYQLNVKYTVRNT 170
           D +I + + L+  PN+++Q+N  + ++ +
Sbjct: 674 DSRIKTTEKLSTDPNTHFQVNQSHGIKRS 702


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,157
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)