Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C10
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   0.49 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   2.6  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   3.4  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   4.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.5  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   6.0  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   7.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.9  
SPCC1393.14 |||nuclear telomere cap complex subunit Ten1|Schizos...    25   7.9  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +2

Query: 221 RLCER--DYRCQRIHQPMVCCYCCTN*HNCQ*NSPSHCSWLETCYHF 355
           R CE+  +Y+C R H    C  C    + C      HC W + C  F
Sbjct: 97  RFCEKCQEYKCDRSHH---CSQC----NKCILRMDHHCMWFKNCVGF 136


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 335 LETCYHFS*TTLKSFQ-ICNYDYSV--SLIIKGYLS 433
           +E C+HFS T L   + +  YD+ +  S++  GYLS
Sbjct: 423 IEHCFHFSQTVLSGLRYLQRYDWLLLRSIVFFGYLS 458


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 340 LQPATMRWRILLTIVSVCTAIAAYHWLMDPL 248
           LQ       IL  +  VC A+AA H+L  PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 344 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSS 249
           MS  S NE   +  N  S Y N+S+P +D ++
Sbjct: 417 MSKLSLNEQPAAPSNSNSQYMNTSMPTLDSTN 448


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 341 SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLF 201
           S +S  ++   T + +S  S S  P  DGS D+  +AH  +  S  F
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAF 287


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 370 ERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPV 239
           +RRL   I         W  LL +V VC  +     L+ P+ PV
Sbjct: 10  QRRLVREINKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPV 53


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 516 YSKQLKHTNRPKFKSMMCKINASCYLFTK 602
           +S +L+ +N PKFKS    + +S ++FTK
Sbjct: 305 FSFKLEDSNTPKFKSSSKPVKSS-FVFTK 332


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 401 SSHNYRFESF*ASFN*SDSM---SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLA 231
           +S+NY   S  +S   S S    S TS + + +S+ N  +  S +S  L   S+ + SLA
Sbjct: 61  TSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLA 120

Query: 230 HTVFVESSL 204
            +    SSL
Sbjct: 121 SSSTTSSSL 129


>SPCC1393.14 |||nuclear telomere cap complex subunit
           Ten1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 102

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 299 CVSLYSNSSIPLVDGSSD-TCSL 234
           CV  Y N  + L+DGSS  TC +
Sbjct: 26  CVQSYKNGILRLIDGSSSVTCDV 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,079
Number of Sequences: 5004
Number of extensions: 52452
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)