Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C08
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      30   0.46 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    29   1.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.7  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   5.7  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   7.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   10.0 

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 390 LVLVSHLYAVISRFCVLDQYLSYFFLSVIFN-RFVCQIYYANFSRFK 253
           + LV  + A I+   V    +++ FLS+IF   F+C I++    RFK
Sbjct: 259 MTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWFIKLQRFK 305


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -3

Query: 429 TLLSVPLCLSYGGLVLVSHLYAVISRFCVLDQYLSYFFLSVIFNRFVCQIYYA---NFSR 259
           + L+  LC     + L +HL A ISRF +LD  L +F +S  F      +Y+     F  
Sbjct: 169 SFLAATLCTLM--VALDNHL-ATISRFILLDSMLLFFIISTFFCLSRYHVYHKAPFTFYW 225

Query: 258 FKLILIKSYVIDLYNGLEISEIF 190
           FK + +    I     +++  +F
Sbjct: 226 FKWLFLTGVCIGCVCSVKLVGLF 248


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -3

Query: 345  VLDQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVIDLYNGLEI 202
            +L QY++    S+      C++   + S    +L+++ V D+Y+ L+I
Sbjct: 2442 LLTQYVNANIPSISMETTACEVVGTSLSLLNKVLVENEVGDIYSYLKI 2489


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 390 LVLVSHLYAVISRFCVLDQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVID 223
           L+  S++   IS  C+LD +       ++FN+ + ++   +  RFK   IK  V+D
Sbjct: 53  LIPASYVEQQISA-CLLDVHCEVMKTGMLFNQQILKVIVESIDRFK---IKKVVVD 104


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 653  HIFRQRQCCQLILEQRLESAILFRALRTTFSLSVLH 760
            +I RQ +C  + L Q +   +    L T +SLSVLH
Sbjct: 978  NIVRQGRCTLVALVQ-MHKILALNCLITAYSLSVLH 1012


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 435 AATLLSVPLCLSYGGLVLVSHLYAVISRFCVLDQYLSYFFLSVIFN 298
           A  LLS     S    +LV H+  V+ +F + +++L     +++ N
Sbjct: 725 AIILLSATFLYSLIAEILVEHVDTVLDKFAISEKFLGLTLFALVPN 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,146
Number of Sequences: 5004
Number of extensions: 71240
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)