Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C08
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    33   0.28 
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029...    29   4.5  
12_02_1252 - 27346314-27347327                                         28   7.9  

>03_06_0353 -
           33317015-33318235,33318567-33318824,33319587-33319904,
           33319949-33320011,33320103-33320496,33320684-33320796,
           33320932-33321639,33321667-33323199,33323395-33323607,
           33323718-33324700,33324890-33325423,33325694-33325820,
           33326083-33326162,33327347-33327377,33327949-33328053,
           33328119-33328124,33328349-33328985,33329144-33329478,
           33330394-33331113
          Length = 2792

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 332 YWSKTQKRDITAYKCETSTKPPYDRQSGTLSSVAARVSTKRHTKATEG*QPSPWCCQP 505
           Y SKT++ +    K ETS KPP D  S  +   + +  T+   K+ E   P+  C +P
Sbjct: 467 YPSKTEEMERLGLKSETSKKPPLD--SSKVKESSKKGYTREKRKSEENGSPTSSCKRP 522


>04_03_0389 -
           15302079-15302120,15302545-15302634,15302718-15302983,
           15303196-15303883
          Length = 361

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 14  LRWLGVPARVSPSSLISLASYKYWHHIRH*PTTIWTQSQTARSLQLPLY*IPSNTLIGEK 193
           LR  G+  +V  S +   +S + WH     P  + TQSQ+A   QL L  +P N ++ + 
Sbjct: 286 LRKAGLRPKVKTSRIPGASSTEEWHESEQEPAEVLTQSQSAYD-QL-LSQVP-NPMVAQM 342

Query: 194 ISEISK 211
             E S+
Sbjct: 343 FEESSQ 348


>12_02_1252 - 27346314-27347327
          Length = 337

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 29/108 (26%), Positives = 41/108 (37%)
 Frame = +1

Query: 94  STLTYNNLDTITNSAITPASPLLNSIKYSYRRKNFRDF*TIIQVDYIRFNQYKFKSREIR 273
           S + YN  D +        +P+  +I      +   D  T  Q  Y  F +  F    + 
Sbjct: 228 SNIRYNITDGLCTPVRDRRAPVYVTIGDGGNIEGLADEMTWPQPPYSAFREDSFGHAVLD 287

Query: 274 IIYLTHKAIEYYR*EKVAKILVQDTEARYNRV*MRN*HQATVR*TKRH 417
           I   TH    +YR +  AK+   D     NR  M N   +T   TKRH
Sbjct: 288 IKNRTHAYYAWYRNDDGAKV-AADAVWFTNRFHMPNHDDSTPTPTKRH 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,278,789
Number of Sequences: 37544
Number of extensions: 429367
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)