Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_C08
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.0  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 436 SGNTAERAALSIVRWLGASFAFIRGYISLLCL 341
           S + A+    +I  W    FAF  GY  L  +
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGYAKLAAI 47


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 466  YRRLTAFTLVLPASAVRAQRRPVLT 540
            YR +  F   L +++V+ QRR V+T
Sbjct: 1536 YRPINEFHWTLVSNSVKMQRRFVVT 1560


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 466  YRRLTAFTLVLPASAVRAQRRPVLT 540
            YR +  F   L +++V+ QRR V+T
Sbjct: 1532 YRPINEFHWTLVSNSVKMQRRFVVT 1556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,449
Number of Sequences: 438
Number of extensions: 5416
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)