Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_C02
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 170 1e-43
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 166 2e-42
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.39
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.6
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.1
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 3.6
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.6
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 8.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.4
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 8.4
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.4
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 170 bits (414), Expect = 1e-43
Identities = 87/173 (50%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Frame = -2
Query: 539 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 360
MGIDI H RK +R++ S+++ RT+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 359 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 186
IS+S++A K + EG V+VGTVT+D RL +PK++VAAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120
Query: 185 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTQG 27
E+LT DQLALRAPTG TVL++G+++AREA RHFG P H PYVR++G
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEG 170
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 166 bits (404), Expect = 2e-42
Identities = 84/173 (48%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Frame = -2
Query: 539 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXRTNAKFNQIVLRRLFMSRINRPP 360
MGIDI H +K +R++ S+++ RT+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 359 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 186
IS+S++A K + + VVVGTVT+D R+ +PK+++AAL T+ ARARIL AGG
Sbjct: 61 ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120
Query: 185 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTQG 27
E+LT DQLALRAPTG TVLV+G+++AREA RHFG P H PYVR++G
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEG 170
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.39
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 308 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 132
L+ +VV +TNDVRL++I + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 131 VLVQGQRNAREAVRHFGPAPG 69
V+G EA + G PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 275 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 162
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 174 SKNFSSSSQNACTSFFGNMKSSHRH 248
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 196 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 56
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 177 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 290
KN+ SS + TS + N+ +S+R +R +QS V + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +3
Query: 42 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 206
+G S+ A W RA + C I L+ + + TK + KN SS++ A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363
Query: 207 CTSFF 221
C+SFF
Sbjct: 364 CSSFF 368
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 170 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 75
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 102 TSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIC 281
+S S + + + +S ST S + S + SSSS+ A +S + SSH+ S
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPV 419
Query: 282 DCPHYHGNQTLTS 320
YH + + S
Sbjct: 420 SSAFYHNSTSSRS 432
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 136 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 47
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +3
Query: 135 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTL 314
L+A ST S K S + F K S RYL Q IC+ P + +L
Sbjct: 53 LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112
Query: 315 T 317
+
Sbjct: 113 S 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,421
Number of Sequences: 5004
Number of extensions: 54259
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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