Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_B21
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 55 1e-08
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 55 1e-08
U58764-2|AAB00724.3| 105|Caenorhabditis elegans Hypothetical pr... 29 1.5
U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical pr... 27 3.4
AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical ... 27 4.5
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 5.9
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 5.9
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 55.2 bits (127), Expect = 1e-08
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -2
Query: 314 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQSGLRWSVQTHLQKE 138
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQSG + +K+
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 137 GK 132
K
Sbjct: 61 AK 62
Score = 50.4 bits (115), Expect = 4e-07
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -1
Query: 144 KRRQKPLRKLCSVLSVLIXKVRSQVALKRCKHFELGGDKKRKGQMIQF 1
+++ K +K+ + K + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 58 RKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 35.5 bits (78), Expect = 0.013
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = -3
Query: 289 GRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSQGYGGQSKPIFXXXXXXXXKIVL 110
G+ K+ N K T+Y K + R D G+GGQ+KPIF KIVL
Sbjct: 14 GKCRKHTNH-KVTQYKKGKESKFAQGRRRYDR---KQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 109 RLECAD 92
R+EC +
Sbjct: 70 RMECTE 75
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 55.2 bits (127), Expect = 1e-08
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -2
Query: 314 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQSGLRWSVQTHLQKE 138
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQSG + +K+
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 137 GK 132
K
Sbjct: 61 AK 62
Score = 50.4 bits (115), Expect = 4e-07
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -1
Query: 144 KRRQKPLRKLCSVLSVLIXKVRSQVALKRCKHFELGGDKKRKGQMIQF 1
+++ K +K+ + K + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 58 RKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 35.5 bits (78), Expect = 0.013
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = -3
Query: 289 GRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSQGYGGQSKPIFXXXXXXXXKIVL 110
G+ K+ N K T+Y K + R D G+GGQ+KPIF KIVL
Sbjct: 14 GKCRKHTNH-KVTQYKKGKESKFAQGRRRYDR---KQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 109 RLECAD 92
R+EC +
Sbjct: 70 RMECTE 75
>U58764-2|AAB00724.3| 105|Caenorhabditis elegans Hypothetical
protein M03E7.3 protein.
Length = 105
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 119 FLSGFCLLFEDGFGLTTVTLTVYDH--NVFY 205
FL+ +CL + GFGL LT++D+ N +Y
Sbjct: 30 FLAMYCLWWFGGFGLVIFKLTLFDYCENCYY 60
>U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical
protein F42A9.7 protein.
Length = 267
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 298 NSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSQGY 170
+ +GR++K+ N+TK T S+KS R + + M+ N +G+
Sbjct: 67 SKSGRSSKSSNSTKTTGSKSSKSSRSQRSNK-SNKMVTNPKGF 108
>AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical
protein D1079.1 protein.
Length = 113
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 212 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSFGTISTNV 349
QR++P+ TF + +LC +YI C S +V + FL +F + +NV
Sbjct: 30 QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF-VMDSNV 77
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 226 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 321
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 226 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 321
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,455,723
Number of Sequences: 27780
Number of extensions: 164211
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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