Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B16
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    29   0.40 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   0.70 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   0.70 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.92 
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   4.9  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   4.9  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   4.9  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   6.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   6.5  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   8.6  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    25   8.6  

>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -1

Query: 315  FRGLLSN----LNL--PLVD-NFRQLQPLFGRRVFVRITSKNPKFKKTKLHYSKW 172
            F GLLS+    L+L   L+D   +Q  P   RR+F R+ + N   KK K  + KW
Sbjct: 1605 FEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 269 SGSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 126
           S S  +   +V+SS     + SS +P S+TP  +     SP+ T STS
Sbjct: 453 STSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTS 500


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -2

Query: 257 NRCLVAVS--SSESHQRTLSSRRPNSTTPNGTGLDTRSPKM 141
           +RC  A+S  SSESH +  ++++P S TPN T +  +S ++
Sbjct: 541 HRCEAAISSHSSESHSKR-TTQQPKS-TPNHTNIKVKSERL 579


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -2

Query: 257 NRCLVAVSSSESHQRTLSSRRP------NSTTPNGTGLDTRSPKMTSSTSMNKYIY 108
           NR    +S S    +TL    P      +   P  +G+D+ S K+ +S++ N+YI+
Sbjct: 401 NRLKSLLSISSHLPKTLQLMEPLLDGILSQLVPKSSGIDSNSQKLLTSSTSNEYIH 456


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 239 VSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSS 132
           +SSS ++  T SS   +++TP  T   T++  +TS+
Sbjct: 170 ISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTST 205


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 236 SSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMN 120
           S+SES Q   S+R  NS TP  T   + +  +++S  ++
Sbjct: 177 STSESSQTDTSTRPANSQTPTTTRASSYTTLVSTSNQVS 215


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 248 LVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIY 108
           LVA    E  Q  +S   P     + T L + +P M ++  + K+IY
Sbjct: 364 LVAQLYEEMQQIPMSEMNPLLNLSSPTSLISSNPNMLANLPLRKHIY 410


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 245 VAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSST 129
           V+VS +     T +   P+S +PN  G    S  + SST
Sbjct: 8   VSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASST 46


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 200 RRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYIYPITTD 87
           +RP S  P  TG  T +P+ T ++        +P T+D
Sbjct: 272 KRPASIAPQPTGASTIAPQPTGTSPSPPVEMNFPDTSD 309


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 128 KSMTSFSDFLCPTQSHLE*WSLVFLNLGFFDVILT 232
           K   S+ +++   QSH E W  + + +G F ++L+
Sbjct: 126 KIKESYLEWIGENQSHSEIWGPIVIYVGLFILLLS 160


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +2

Query: 359 ITHVTASAQGGVVNDPLYV*NLSVSKPDRIDDKEKVCGSCRVEL 490
           + H  A A GG+ ND      L V K    DD   V  SC V L
Sbjct: 258 VRHEAAEALGGIANDEC----LPVLKKFSKDDVRVVAESCIVAL 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,176
Number of Sequences: 5004
Number of extensions: 40890
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)