Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B15
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    27   2.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   4.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   4.8  

>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 163 QICIFCNSMS-FNTYCVLSIEM*YQELHLVPQYNKHEILNK 44
           +IC F   +S F T  V S+   Y  LH  P   KH++LN+
Sbjct: 207 RICKFVGKVSLFTTLIVYSL---YDSLHPSPGGLKHQVLNR 244


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 163 VLGLF-CMVATIFDRFKKVVDNILHCRY 243
           + G F C   T FD  +++V +   CRY
Sbjct: 18  IAGCFTCQCGTQFDNVERIVQHFKECRY 45


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 163 VLGLF-CMVATIFDRFKKVVDNILHCRY 243
           + G F C   T FD  +++V +   CRY
Sbjct: 18  IAGCFTCQCGTQFDNVERIVQHFKECRY 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,456
Number of Sequences: 5004
Number of extensions: 35487
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)