Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_B12
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 106 VIPQCLSNEIRNSRSRQKKK 165
           V+P  ++NE+R+SR    KK
Sbjct: 387 VLPISVANELRHSRPVPAKK 406


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 575 PTYICYL 555
           PTYICYL
Sbjct: 655 PTYICYL 661


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 106 VIPQCLSNEIRNSRSRQKKK 165
           V+P  ++NE+R+SR    KK
Sbjct: 387 VLPISVANELRHSRPVPAKK 406


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 458 CYYKKWVL 481
           CYY+ WVL
Sbjct: 113 CYYETWVL 120


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 458 CYYKKWVL 481
           CYY+ WVL
Sbjct: 79  CYYETWVL 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,696
Number of Sequences: 438
Number of extensions: 2482
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)